Gene detail

Detail information of Am06G019380.1 Annotation

Gene ID	Annotation
Am06G019380.1	evolutionarily conserved C-terminal region 8

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G019380.1	mRNA	Chr06	106330473	106335707	-

Sequences

CDS:

>Am06G019380.1
ATGGCTGCTAAATTGCAAAAAGCTGCAGATGAAATGAGTGGGAAGAAGCTTCATGGTGATTCTTCAACGATTGAACTCAATAATTCAAACATGGTTCCTTCAAAAGGTGCAAGTTCTCCATTTGATGCAAGATCATGTGTATCATCTATAGGAGATACATCTGGTAGTGTTAAAGAAGGGGATGTGGATCATGAATATTTGTCCACTGATCAGAATGTTCCTTATGCTGCTAATGGTTATTATGGATACTACTATCCAGGTTATGGTGGTTTTTATGGAGAGACAGAAAACCAAGGTTATTATGTTGGTGCTGATGCAGCTGTGGATCTTCAATATCCTGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCATGCCAGGATTTCAGACTGGCTACTCTCCATACTTTCCTATGAATACACCTGGTGTTGATGGCCAGTATATCTACCCCCCTGGCTCCATATTTCAACAACCAATTGGATCACCGGGTTATTATTCAGCCGCTTTACCTTACGCAGAGTTATTGCCATCAACATATTCATGGGATTCACCTCTAACACAACAAGATGTATCACAAGGGAATAGTTATTATAATGAATGGGCTGGTAAACCAAGTGGTAGATCTAGTTTGTCTTCCCAGAGTCATACAGGGTCAAAGTCTGTCGCCCCGCCTAACCCGAACATCTCGTTAGAAGTGAAGGGTTCTCCGCCATTATTAGACGTCTCATCAACTCATGCTAAGCGTAATCAGACAAAGCAAGTAAACAAGGCACCTATTAGTGGCCCGATTCTCCATTCAGATCCAATGGCAAAGACTTCTTTGCCAGTCGCGAAGTTCCCTGCATACAATCAAGGAAAGAGTGGATACCTCTATCCAAACAACTTGTCTAATGTGAAAGGAAATACAAAGGGATGGGTTAGTAGTGAGAAGCTGAAACTTAGAAGCAAGTTTAATGATTCACTTAATGAGCAGAATCAGGGTCCTAGAACAGCTAATCCGAAAAGTGCATTAATATCTGGCAGTGGAGGTAATTCTGCGAGAGCCTCGGTGGTAGATGGAAACAGCAAAATCAGGACAGATGAATATAATCTTCCTGATTTTCCGACGAAATATAATCACGCGCTTTTTTTTGTCATCAAATCGTATAGCGAAGATGATGTTCATAAGAGCATCAAGTACAATGTATGGGCCAGTACTCCTAATGGGAATAAGAGGCTGGACAGTGCATATCACGATGCACAGAAGCGAATGGAAGAGAAAGGAAGCAAGTGTCCAATATTCCTTTTCTTTTCGGTTAACGCGAGCGGTCAGTTTTGTGGAGTAGCTGAGATGATGGGGCGAGTTGATTTCAATAGAAGTATGGATTTCTGGCAACAAGATAAATGGAATGGATATTTCCCTGTCAAATGGCACTTTATAAAGGATGTTCCGAATCCTCAGCTACGGCATATCATCCTCGAGAATAATGACCACAAGCCTGTAACAAATAGCAGAGACACACAAGAGGTTGGCATCTTCCGCGTTTTATTGAAGCAACTGTTTTCTGTAAATTTCCTAGTTGTTCATATAGCATATACTCACTATTGTATTGTATGTTTCAGGTGCATTTTCCTCAAGGTGTTGAAATGCTCAACATTTTCAAGAGCTATGTGGCAAGAACATCTATATTGGATGACTTTGAATTTTATGAAAGCCGTCAGAAGGTCTTGCAGGAGAAGAAAATGCAACCTATGCCCCATACTAATACACAGGTTTACTTTTACACGGCTACCTTTTTCTAAGCATATAGATGACCTAACAACCGCAATTGGGTCAGTAGATCTATCAGATGTAAAGAACATGGAGGATCCTAAGTTGGTTGAGAAAGTGAATGACTGA

Protein:

Promoter(3k):

>AM06G019380.1
AATTTTAAATTTTTATGTCTACTTTTTTTTGGTCAAACTTTTATGTCTACTTGAAATATTTTATAAGTGTTATAAATTAAAAAGTAATATTGTCCAGACGGGCCAAAGTAAAAAAACTTATAAAATTAAAATGCCAAGTTATTATCATATTTAATTAATGAAAAACAGTAAAATAGATAACATTCATTGAAATTGTAACTTTTAATTCAATTTAAAATATGTAAGATACCTCTTAAAATTTAATAATATAATAATTCAGTCAAAATATTTATAAAATATATACCATATATGATGTGGATATGAAGCTGATATGCATTATCTAATGAGTCTATAAATTTAAATATATTTAAATAAAAGTTAAATATTTCTTATAACATATAAGTTTTTTTTTTTGACAATAACATATAAGTTTTTTAGAAATATATTTTATAATATATTTTATACCAACACGGGTTGATCCGAGTGGTATTGGGCTCGAATTTCACCTCAAGGTCTCGGGTTCGAATATTGGTCGTCGCAAAAACTCGGTTGGGATGGGAGAACGACAAAGTCGGGTTTGCACGTGGCCAGTCAGATTCCCCGACATAGATTAGTCACTGACAAGACCAGTGAAAACTGCGCAATAAAAACACGGTAAAAAAATGTTGTTTAGAAATTTACAATATAAAAACCTTTGCAACTATTGTGCATCTTTTAGACTTGTCAAAAAAATATATCCTTTTAGAATCGAGTTTAATTGACATATATTATCGCTGTAAAAAGTTATGCACCAACACCGAACATAAATTCATGGTAGAGAAGACTTTTAAAATAGTTAGGATAAAGATAAACATTTTTTGTGAATTGTTTCGTGAGCTAATGCAGTAAGAAATACCATAAATTGTAAATAAATAAATCCTTTATAATTCCACACATATTCGTAATGAGTTTAATTTATATATACAATGTACGTATACATGTTTTATACTATCTATCAATTATAAGATGACACTTTATTAAAAAGAAGTTGGCTAAATTGCTTTTTTGGCCCTTTATCTTTGGGGTTACTGTCACTTTGGCCCTTTATCTTTTTATTTTCTCGTTTTAGACCCTCATGTTTTTTTTGTGTCATTTTGGCCCCTGCCGTTAGATTTTTCTAACAGACGCCACGCTGGCAGTTAACTGCTGACGTGGCGTCCGAATTGTCAAATCTGACGTGTTTTCATTAAATGACATGGCCAATGAGGGACCAAATTGAAACAAATTAAAAACATAGGGGACCAAATTGACACAACCACAAAACAGAATCAATCACTATTCATCTTCTTCCTCCATCTTCATCTCTTCTTCTCCGGCGAGCCACCACCACCAGAAGCGGCGGAGATGACCTCCGGCACGGTGGTCGCCGGTGGAAGGTACTTCATTGACAAAAAAAAATTAGGGCTTTTTGAGAGGATGACGCGACGATTCTGAATATCAAACTCGTTTTTTGATTGAAGGTCCATGGAAACACAGATCTGTCAAAAACGAAAAGGAACGAAGGAACGAAAATGAATGAATTGGTGGAGAGATTGCAACAAAGGAACGAAAACGAAAAAGAGCGAATTGCAACAAAGGAACGAAAACGAAAAGGAAACGAATTGCAACACAGATCTGAAACTTATTCTTCGAGATCGGTTTCTTGGTGGAGAGATGCGCAGAGAGAAGGAGAGGAAAAGAAGGAAAAATGTGAGAGGGAGAGTGAGAGAGATGCGACGGTGATGGTGAGATGGTGGTCGTTTGGGGTTTGGGGGGTGGTCGTCGTATGGTAGGAGGGTGGTGACGGTTGCTGTTACGGTGGTGCTAGTGAAGAAGAAGAAGAAAGATCTGGTTTTTTTTTTATTTTGATGTTTTTAAGTTTTTGTGTCAGTTTGGACCCCTATGTTTTTAATTTGTTTCAATTTGGTCCCTCAAAGACACGTCAGATTGGACAATTTGGACGCCACGTCAGCAGTTAACTGCCAGCATGGCGTCTGTTAGAAAAATCTAACGGCAGGGGCAAAATGACACACAAAAAAACATGAGGGTCTAAAACGAGAAAATAAAAAGATAAAGGGCCAAAATGACAGTAACCCCAAAGATAAAGGGCCAAAAGAGTAATTTAGCCAAAAAAAGTTATTCAATTAGTAACGACCTCATATATCATCCCTGTCGTATATTAAGATTAGTAAATAGTGTAATAAATTTTAAAAAAAACATGTGTATACTGATTAAACTCATTCGTAATTTATTTGAAATAACATTTTGATTTTGAATTCACGCGGTTAGTTTGCATACACAAATCACACAAAAGTTAAGAAAATGAAAGAGAGTTGTAAACACTTTTTTTACACATCGCTTTTTAATTTTTAAATATTATCTATTTTATAATGACGTGGCACTTTCTCCACCGTCACTTTTTCCTATTTTATGAGAAGATGCCATTATATTTTTTCTTCTGCTTCTTCTTTCTTTCTTCTTCATTTTCTCTCTCTTCTGTCTCTCTGTGTTGTCTCCAGAGGATTCTCTCTCTTCCTTCCATTCATCAGCATCCCTTTAAATAGCTTCTCTATTCAAACCATATCTTCCAACAAATCCAAGAAAGATTATATCTTTTTAAGGATATTCTCACCGTGCTTCTCGCCCTTGTTTTTTCTCCCATCTCTAATTTTCACACAAAACTCCATTTCTTTCGTGATTTTGTCCTCACAACCCAGAAATCTAGAGATATCAAACAGCAAAAATAATCCATACCCAGATTTTCTTTTTCTAAAATATCTCGTGGGGTTTATCGGTTTTTTGATTTTTTTTTCTTCAAAACCTTTCAATCTTCAATTTTTCACCTCCCCAGTTGAAGAGACACAAAAAGCTGAATATATAATTTAAAAAAAAATCCGTTTTTTAATTTATTTTTTGAGGATCTGTATTCTGCCGTTTCCAGTGGATTTTGTTAAGAGGTTTTTAGAAGAAGTTTTATAGCTGAAAGATTTAAGTGCTACTCCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04146.18	YTH	377	504	4.00E-35

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0050779	RNA destabilization	Biological Process
GO:0061014	positive regulation of mRNA catabolic process	Biological Process
GO:0010629	negative regulation of gene expression	Biological Process

InterPro

InterPro term	Description
IPR045168	YTH domain containing protein
IPR007275	YTH domain

trEMBL

trEMBL term	Description
A0AAN9KUU5	_

SwissProt

SwissProt term	Description
ECT4_ARATH	YTH domain-containing protein ECT4

KEGG

KO	Description	Enzyme
K20102	YTH domain-containing family protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G79270	evolutionarily conserved C-terminal region 8
Medicago sativa L.	MsG0280009447.01.T01	_
Oryza sativa L.	LOC_Os01g48790.2	YT521-B-like family domain containing protein, expressed
Cucumis sativus L.	Csa005793	_
Glycyrrhiza uralensis Fisch.	Glyur001083s00026397.1	_
Codonopsis lanceolata	Cl_C02007_unscaffolded_00040T	_
Arachis hypogaea L.	AH18G24010.1	YTH domain-containing family protein 2 like

Expression pattern