Gene detail

Detail information of Am06G019040.1 Annotation

Gene ID	Annotation
Am06G019040.1	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G019040.1	mRNA	Chr06	104171721	104173820	+

Sequences

CDS:

>Am06G019040.1
ATGAACTCCTCCTCCTCCTTCTATTCAGCAACCCACCAACGCCTACTTGCAATGACAAAACTAATATCCTCTCACATCAACCAATCCCGTCACGAAGAAGCCCTATCCCTCTTCCACCACATGCACTCCTCTTTAACAATGTCCCTCGACCCTCACGTCTTCTCTCTCATTCTCAAATCCTGCACCGCCACTCACCGTCCTCTCCTCGGCACCTCAATCCACGCTCACCTCATCAAATCCTCCTTCCTCTCCAGCAACCCTTTCCTCTCCAGCGCACTCATTGACCTCTACGGTAAATGTATCTCCGTCTCTTCTGCACGCCAACTGTTCGATGAAACTCCCCACCGAAACGTCGTAGTTTGGAGCGCCATCATTTCAGGTTATGCTCGTTCCCGCCACGTCAGCACTGCAATCGAATTATTCCACCTCATGGATGTTCCTCCTAATGAAGCCACCTTCAACTCAATCATCGCTGCTCTTTCTTGTTCTAATCTAAACGACGCGTCGTTTAAGGCTATAGCGTTTTACCGAAATATGCTTCAATTAGGGTTACAACCGCGTTTGATTACGCTTCTTGCTCTTCTCCCTGCTACCGTTGCAGTTGGGGCTTTGAATTTAGTTAAAGAGATTCATGGTTATGCAATAAGGAATAACATTGATTCACATCCTCAATTGAGTAGTGGACTAGTGGAAGCTTATGGTAGATGTGGATTTTTGATAAATTCATGCAAAGTGTTTTGGAGGATGAAGGAATGTGATAGAGATGTAGTTGCTTGGAGTAGTTTAATTTCTGCTTATGCATTGCAAGGTGAAGCGAAGAATGCGTTGGAGATTTTTCAAAAAATGGAAATGGCAGGAATTAAGCCTGATGGGATAACTTTTCTTGCAGTTTTGAAGGCTTGTAGTCATGGAGGGTTTGATGATGAAGCTTTGTGTTATTTTAAAAGGATGGGTAGTGATTATGGTGTGGAGCCAAATAGTGATCATTATTCGTGTTTGGTTGATGTTTTGAGTAGAGCTGGGAGATTGAATGAGGCTTATGAGGTTATTAAGGGGATGCCTGTTAAGGTTACTGCTAAGGCTTGGGGAGCTCTTCTTGGAGCTTGTAGGAATTTTGGGGATTTGAGGTTGGCGGAAATCGCGGGGAAGGCTTTGGCTGAGATTGAGCCGGATAATGCTGCGAATTATGTTCTTTTGGGGAAGGTGTATGCTGGTGTTGGGAGACCGGAGGAGGCGGATAGATTGAGAAGGGAAATGAAAGACAGGAAAGTGAAGGCAAATGCTGGTATTAGCTGGGTTGTATGTTCAGAGTCATGA

Protein:

Promoter(3k):

>AM06G019040.1
CGACCACCGTGGGAGGATCTTATACTCTAGTTCCTCTCCCATCTCCTTGATTGATAATGGCTCCAACGTTACGACAGAGGACTATCCTGAGTGTCATTGAGGGACCGGTCCTACAGCAGGTGACTCCGCAAGGAGTGTCAGTCACCTTACCCTTTAGCCCGACGCATGCTCGAAACTCGGCTACGGCTATGGTTCCCGGGGGCTCAGCCCGAAACCGACTCCCACCTCCCCCTCAGATGGTCTAGGTGCCAGTTGATGTTGTTCAACAGCTCGTCCAGTTGCTAAATCGGCAAGCCGAGGCCGACCAGCAAAGAAGCCAACGCTACACCCAGTTAGTCGCTGAGATCGGTGGAGGAGGGCAAGGATCGGGGACTCCCCCAAGTCAAACTCTTGATCGCTGAGATCGGTGGAGATCCGGCTTGGAGAAGACACCATCATCGCTCTCCGCCTCGTCGTAGAGGAGGGCGAGGATCGGGGACTCCCCCAAGTCAAAGTCTTGATGATACCTACTATCTTGAGGAAGTAAGAAAACTGATTAGTACAAACACTCCAATATGAGAAAGGTTACGCAAAGTGATGTAAGAACTTATTCACTGGAAGCGATAGCGATGATTAGAACTTAGGTGAGCCTACCGATTCTACTTCGGAGTTCAGACATAATATGTTTGTTGGTATTTGAGTATCTTCTGACATTCTTATCCAATATCCATGGAGTAATGTTTTTTTCCTTATAAAAAGTTAGAATAATTGCATCATTTCATTTGTTAATGTTTCCAAATCGTGAATGATAAATGTTCCTAACTATTTCCTGGGGAGGATCTAGCTAAAACACAAGAGAATGATAATCACGAATAGTATGAGTAAAGAGTAAGAATGAGTCTAGAGTGAAGATTCAACATGAGATCCTTTCATTAGCCTTAAGGGCGTGTTTATATAGTACAATCAGGTAGTAATTGGTATTTAATACACATTATGGTCGTTACGGATCTGGGGGCATAATTATAGGGGTTCCCATATATATTCTGCCTATCTTCGGTCTCTGGCCGAGCCAAGTGACGGGGCCGAGCTTCAAGGAGAAGGGAGGAGTCCCTCAGTCCGCAGCGCTTATTAGAATCCCTCGGTTCTGAGGGCGAACCTGGGTCTTCAGATACTTTGTCTTGCCTTCCCGAGAGACAGTCGTGCCGGCTATGAAGGAGTGTGTGGTCGACCTTTCCGGGGCTCGGCTATGAACAGTAAATTAGAGTTGCTCAAACGTGATTCTCTATGTGATGTGTGGAGTTTTCATGGACTTTCAACAGAAACTTCGATTAAAACAAATTAAACATGCAACAACAAGGCAGGCCCGGTCATTAGGTTGTGCAGGCCTGTGCAATAGCACAGAGCCTCAGCCCAATCCAAATATTTTAGGGCCCCCCAAAAAAAGTATAAACGAGATATATATTGTTTGTTTGCATTTGTTAAGGGCCGAAGGCTGATTCCCGTCGGCAAAAATAGAAATTTTAGCAGCTTGGGGTCTAAATTGACTATACATGACCACATGGCTAAGATAAACAGCTAAGGTGCCTACTCGGCTGACGCCTGATTGGACGAGGTAAGACTCGGCCGAGACAAATCGGCTTGACGTGGCTACTAAGTTTATATAGACTTGGAGGCTAATACTTGGTCTTAATGCGTTCATATAATTATTTATTAAATAATATGATTTATGAAAGTAAATATAATGGAGAAAGGCCGAGCCAAGCTAGGGTAACCATCTTCCTAAATTTATGGGAAGTGGGCATGAGGAGTTGGCCGAGTTAAAGGAGCTTGCTTTGGGAGCAAGCATTCAATGCACGTGGACACATTTAGACGTTGGAGCGGTTAAGACAACGTGGAGAAGCGCCGTAGAAGTGGAAGCGAAGATATTTTGACCCCACTACACGTGCTAGTAAAAGAGTGGAAGAGTGCTTCCTAGTTTTTAGCGCCTGGATGTAATGTAGTGCGTTGATATTGATTAATCCAACGGTAGGCAAATGTTGACTGTGTTAGTGGCCGATGAGGGCCTATGTATATAAATAGGAGAGCAATTGTACAGAATAGACACACATCAATCAATCAAAAACTCTACGTTTATTTCGTCTATCTGTTTTTATCGCACTTTATCTTTATTTTTATACATTAGCCAGTAGTATAATCCAACCCTCGCAGTCCCCTCTCACCTAACCCGGCCATTTCTAGAGGAGTCAGGATACCCACCATCAAGGAGCAGAGTTCCCTCCTTGGCGCAATCGCTTGAAGAACAAGGAATCGAAGAACTTGCTCAAACCCCTGGTCGAATCCACAGCTAGGACCTAAGAGTTTGAACCAAGCAACAACACTAACATATTAAAATTTTTAGTGATGCCAATGAAGAATTTTGAGCCATCCCCACAAGATGTGAGTTCAATTATTATTCTCTCTATGGGAAACTCCTTTATATAAATTAATTATAAAATATTTAATTTATAACAAAAGTTTGATAATTTGTTTAAAAATAATTACAGTTTTCAAAAATTAAAATTAATTTATTCGCTATCTTTCAAGTTTCAATTTGCATTTGAATTCTTCTTGTTATTTGATATTGTTTCTTACTTCGTTAACTTTTTTCTTTTTAAATTGAAACGATTTCTCTTTTGGTACTACAGGGTAGAGGGAGAATTTGTATGTCTAGTTGACTAATGTAGCAAGTCAATTGATGATTGTGAAATTTGCTTGCTCATCTTCGTGAATACCATCGCCAAAAAAACGAAATTATCAGTTTATAGTAGCTTCATAGCTTCAATTTATAATAGATAGCACAATTTATAGTAGATTATGTCATTAAAAAGCTGAGGAATTTTATCCTGCACTAGTTGTAAGTTGTGTACCTTGTAACTAGTTACCTTCTTCTGTTCATTCAAAGTTCAAACAGCGCAAATTTCACCGATATTTCTTCCGTCTCCACGTTTTCACAATTAAGAACCTCGTCATCTTCGAGCAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	257	287	1.20E-37
PF13041.9	PPR_2	116	160	4.00E-36
PF13041.9	PPR_2	254	302	4.00E-36
PF12854.10	PPR_1	322	353	1.50E-25
PF13812.9	PPR_3	254	301	3.30E-20
PF20431.1	E_motif	374	433	3.60E-15
PF17177.7	PPR_long	270	374	1.50E-13

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009451	RNA modification	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0016787	hydrolase activity	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat
IPR046848	E motif

trEMBL

trEMBL term	Description
A0A072VJ34	_

SwissProt

SwissProt term	Description
PPR7_ARATH	Putative pentatricopeptide repeat-containing protein At1g03510

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G03510	Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.	MsG0080048924.01.T02	_
Oryza sativa L.	LOC_Os03g63510.1	pentatricopeptide, putative, expressed
Cucumis sativus L.	Csa007737	_
Glycyrrhiza uralensis Fisch.	Glyur000240s00016382.1	_
Codonopsis lanceolata	Cl_chr03_53080T	_
Arachis hypogaea L.	AH07G17350.1	Putative pentatricopeptide repeat-containing protein At1g03510 like

Expression pattern