Gene detail

Detail information of Am06G018250.1 Annotation

Gene ID	Annotation
Am06G018250.1	GRAS family transcription factor family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G018250.1	mRNA	Chr06	96829405	96831440	+

Sequences

CDS:

>Am06G018250.1
ATGGTTTCCGCTGAGTCTGGAAATAAGACTCGAGATATTGACGGCCACCTCGCCGATGTCGGTTACAAAGTCCGGTCGTCGGAGCTACGTCAAGTGGCTGAAAATATTGAACGGTTAGAGAACGTGATTGTGAACTCATCAGAAGACATTTCTCAACTTGCTTCTGATACGGTTCTCTATGACCCTTCCAACATTGGTTCTTGGGTGGATACTCTTTTATCTGAGTTCGATCACAACGCTTCTCTACCGTACGATTTTTCTGTGTTACCAGATCTCGCTGCGGCTCCACCACAAGACCAACACGAACAACTAACTCTTGTAACAACAACCGTTGAAGAAGACTCCGCGATTAGGCTTGTTCATATGCTGATGACGTGTGCGGATTCTATGCAACGTGGCGAATTCCAATTGGCTGGTTCACTCATCGAAGGCATGCAAGGTTTGTTAGTAAACGTTAACACTAATTGCGGCATCGGAAAGGTCGCCGGTTACTTCATCGACGCCTTAAGCCGCCGAATCTACGGTCAAAATAACATCACCCAAGTTACGCTTTACGAGAACGATGTTTTATACCATCACTACTATGAGGCTTCGCCGTATCTCAAATTCGCTCACTTCACAGCGAATCAAGCTATTCTTGAAGCGTTCAACGGTCATGATTGCGTCCACGTCATCGATTTCAACCTCATGCAAGGTCTTCAATGGCCAGCGTTAATTCAAGCTCTTGCGCTGCGTCCTGGTGGACCTCCCTTCCTACGCCTCACCGGCATTGGTCCGCCGTCGCCAGATGACCGAGACACGCTTCGTGAAATTGGCTTACGGCTCGCTGAGTTGGCTCGTTCGGTTAACGTCAGATTCGCCTTTCGTGGTGTAGCGGCTTGGCGGCTTGAGGATGTGAAGCCGTGGATGCTTCAGGTCAGTCCTAAAGAAGCCGTTGCGGTAAACTCGATTTTACAACTTCACCGTCTTCTCGGGTCTGAATCCGACCCGGTTCCTTCGGGTATTGATGTAGTGTTGAGTTGGATCCGAAGTTTGAACCCGAAAATTATGACGGTTGTTGAGCAAGAGGCGAATCATAATGAGGAAGGGTTTTTTGAGCGGTTCACGGAGGCATTGCATTATTATTCAACCGTTTTTGATTCGCTTGAAGCGTGTCCGGCCGAACCGGACAAGGCATTTGCCGAGATTTACTTGCAAAGGGAGATATGTAACGTGGTGTGTTGTGAGGGACCGGCTCGTGTGGAGAGACATGAACCGTTGGTTAAGTGGAGGGACCGGCTTGGGAAAGCCGGGTTCAGACCGTTGCATCTGGGTTCGAATGCGTTTAAGCAAGCCAGTATGCTGTTGACTCTGTTTTCTGCTGAGGGTTACTGTGTTGAAGAGAATCAAGGGTGCTTGACTTTGGGTTGGCATAGCCGGCCTCTTATTGCGGCTTCGGCTTGGCAAGCCGTGAGTTTGACAGACACAGAAACACTGCGTGATGGAGCAATTGGTTAA

Protein:

Promoter(3k):

>AM06G018250.1
AAGCATACACAAAGAGTGCTTCACTCAAGACTTTCCTATAAGAGTCATACATAAAGTGACTTTAGACAGCACCATATTTTATTTAACTTTACAAGCTTTTATTAAGAATCTAATTGGAACAGTAACGAGTTCTTGGATATATAATGAAAACTTAACTTTGAGTTCATTACACTCCGAAAAAAAGGTTTTCAGGAATTGACTATATTTGTATTCCTCTTAACTTGAATTCCTAATGATTTGTGGTAAACGACAGTGACAAGGATACAATTTTTTTTTCATCTAAATGGATCAACGTTCTGTAATTAGTGCATGGAAGAGAATGACCACAACTTTGCGCTGTGAATTTTGATATTGTGGTAAAATGTAAGAAAATATGGTCGATGTGACTGCAATTGCCCATACCTCTAAAACCGTTATGTTGCAGCAGCAATTGTGGTTGCGAAACGCACTTTAGAACCATGGTTTAACCACATAAGTAATTTTGATCCAACTATTCGAACATGAATCTTTAATAATTGTGTTTTCATGATTGTATCCAAAAATAAATTACTTTACCTTCGTCAAGAAAGGTAAACCTATACCTATGGTGTGTTTTGTATTGCCTCCCGTGCTTCTAAAACTCACGACGAACTCGAACCTCTGCATTGTTACTTTTAGGTCTACATAGTGTATGTTTGGTTTAGCGTCAAGATTGTAAAAATTGCAACAAGAATCTATTGGGAAAAAACAACATAGAGAAATAAAATGAGTACAATCGGAGCACAAGAATTTAACGTGGAAAACTCCAAAACCGGAGAAAAACCACGAACCGTTGTCTAATTCGACAACAATGACAACCAGAGAATACCACTGTGAAAATTGTTACAACATACAGACTTTTCTAAAAACACCCCCATGGCCCTAGTACACCCACACCCTCCAAAGAAAATATTTAACTACATCTCACAACACTCTAAAACAAGAGTATAAGAGAAAAAAATAAAATCAAAAACAACTTAAGGTATTTTTGACTGGTGCATATTGTAATGAAGAACTTGAGCCCATTATATAGCCTCTTCCTTCACAAAACTAAACGATGTGGGACTTTTTCAAAATGTCAATTTCAATCAACTCCAACAATCTCCACCTTAATTGTAATTGATAAACTAGACATCTTCCACTTTCTTTGTATTCAAACTCAACCTAACATATATACACTAATAGATGAGTTGTAATTAGGGCTGGACACCGGTCGGTTACGGCCGGATTCGGTCCAAAAAACATCAATCCAACGAAAACCGAAGCAAGTGGAATCTCATCCATCTCCGACCATTTCAGCCATCGGTTTGTCGGGTGGCGGGTTCAATGGATCAACGGGTGGTCGGGTGGGTTTAAACGGTTTAAGGGTGAAAAAATCAAAGAAAGAAGAGGTAGAAACTTGGAAAGATCGGACATGTGAGAACTATCTTTTCATCTTTATTGAACACAAGGCAGCAACTTGGATAGATTTAAAGCATAGGAAGATTGAACAACACTTGTGGGCTCGATCATGAACTGTGTCTTCATGCAAAGGCTAGATGATAATTTCGACGGCGGAGATAATGCTATCACAACAATGGAATGAAGGTGTGACATTTTTTAACGGTGAGCTTGGAAGTGGAATGTGAAAGAGATAGAAGGAGATGCTGAGTTTCAAGAATAGAAGTTTTTAGAAGAAGATGAATGTAAAGATCTGTGACCGTGGCGGTTGATTGATTGAGAAAAAGTAAAGTGGGTTGTTGTGTGATGAAAGAGAAAAGTAAAAAAAACACTTGCAATTTAATTTTCAAAACTTGAAACTTGAAACCAACACACAACTTTAACTCAAAACTACTATTGGTATTCCCCAAAACCACGAAACTATCAATCTTTCCTCAGATGCGGAGAATCAATCTTTCTCATTAATATTCCTCGGGCGGGTTCGGGCATTCATGGATTTATTTTACAATACTGTAACCGACCACTAACACCCGCATGTAGCTGAAAACTCAACCGTTGGACCCGTTTACCCGCCCACAACCGATCGTTTACCTATTTCCAATACCGGGTTTGTCGGATTTCGGGCGGGTTGTGTTAATTTGTCCACCCCTAGTTGTAATCTGCTTAAGTCTATATCAGTAACCGTTGAAGTACCGTTGATGTGCAGTACACCGTGGGTGCTAACTAAATAGAGAAAGTAAAAAAAAGCAAGCATGTGAAACCAAGGGCTGTCAAGTGTCAAGTGTCAAGTGTCAAATGTCAGGTACTTGTCATCTTAAAATTGAAAATTCCATAAACAAATTAAATCACCTGCCTCATACTGCTTACTTAGAGCGGGTAAAAGAAAGCAAATAAATTGAAAAACAAATAAGAGCTAGCATCATGTGAAATCACAGTACCAAATTGGAATTAACATATTACTACAATTCGTTTGGTTCAGGTAAACAACAGTAGTAATCCACTGTTTTTTTACAGTGAGTGTTGTACAGTTGTACTGTTATGTCTGGCCCAAGAAATCGTAACAAATCACACAATTCTTAATGGTTTTGTACTGATAGTAGACCCAGAAACCACTATTACCCTCCCAAATCCCAAGATAGGACTAGCAGCATCTAAATTATCGAAAGCCACACTTGCCAAAAATTGAAATCACACTACCGTGACATTAGGGATAGTACCATTTTTCTAAAAAAAAAAAATAGAATTATATAAGTAGTAGTATCTATCAATTTGATGCACTTGGACTCAGATAGCTACTCAACAGAAATTAGCAACACATCATGGTCATACATCATACTAGCCAGCTTTTCACTTAATTTCCTCACACATCACTTTCCCATTTTTCTCTTCCCTCCCCTTCTCCCTTCCTTTTTTTCAATACTTACTTCTCACTCCCAAGCCCACCACTTCACTCATCATATAATTCTCTCTTTCTATGTTATCAAACTCAAACATCAACCACAATCAGATCCGTGTGAGTTTTGAATTTATAATTATAAAGAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03514.17	GRAS	119	482	5.90E-125
PF12041.11	DELLA	14	80	3.60E-29

Gene family

Gene family	Subfamily
Transcription Factors Family	GRAS

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0009610	response to symbiotic fungus	Biological Process

InterPro

InterPro term	Description
IPR021914	Transcriptional factor DELLA, N-terminal
IPR005202	Transcription factor GRAS
IPR038088	DELLA, N-terminal domain superfamily

trEMBL

trEMBL term	Description
A0A3Q7YGS4	_

SwissProt

SwissProt term	Description
SLRL1_ORYSJ	Protein SLENDER RICE1-LIKE 1

KEGG

KO	Description	Enzyme
K14494	DELLA protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G14920	GRAS family transcription factor family protein
Medicago sativa L.	MsG0280009128.01.T01	_
Oryza sativa L.	LOC_Os01g45860.1	GRAS family transcription factor domain containing protein, expressed
Cucumis sativus L.	Csa015919	_
Glycyrrhiza uralensis Fisch.	Glyur003501s00042868.1	_
Codonopsis lanceolata	Cl_chr08_31660T	_
Arachis hypogaea L.	AH20G03120.1	DELLA protein GAI1 like

Expression pattern