Gene detail

Detail information of Am06G017650.1 Annotation

Gene ID	Annotation
Am06G017650.1	cyclic nucleotide-gated channel 17

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G017650.1	mRNA	Chr06	89159917	89169266	-

Sequences

CDS:

>Am06G017650.1
ATGGAGTTGAAAAAGGGCAAGCTTGTCAGGTTCTACTCGGATGGAAAAAAGCATAAAGAATCACCAATGTGGGGAGCAAGTGAACCACCGGGGCTTGAAAAGTCTTCATCCAAATACAAGGTTTCATCATCTTCCTTGCTTAAACCTATCAATGCCCTGCCATTAGGGAAAAATAGACTTGGAGGATCTAAGGTATTCCCGGAGGACCATGAGCCTTGGCAAAAAAGAATACTTGACCCGGGTAGTGAGATTGTGTTAAAATGGAATCGAGTCTTTATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTGATAGAAAATACAAAGTCCTCATGTGTGCGGACAGACCACACTTTACGGATTGTGGTAACCTTTCTTCGCACTATTGCGGATGTTTTTTATCTGTTGCACCTCATAATTAAGTTTAGGACAGCATATGTGGCACCAAGCTCACGGGTATTTGGCAGGGGTGAACTTGTCATGGATCCAAAAAAAATTGCAAAGAGATATGTCAGATCTGACTTCTTCATTGATTTTATTGCCGTATTACCACTACCACAGATGGTCATCTGGTTTATCATACCGGCTACAAGAAGCCCTCAGACGGATCACAAGAATAATGCCCTTGCATTGATTGTCTTGCTCCAATATGTTCCGAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACAGCCTGGGCAGGAGCTGCATATAATTTGCTATTGTATATGTTGGCTAGCCATGTTTTAGGGGCAGCTTGGTATCTTTTGTCTTTGGACCGATATACTACTTGTTGGAAATCCATTTGTAAAAAGGAACATAACCCTCAAGATTGCTTTCTTTATCTTGACTGCAGTTCTTTGAATAATGTGACGCGCAAAATATGGGCAAATAGTACAAATGTGTTTAACAGCTGTAATCCCAGTAATGACATTGAGTTCAAGTATGGATTATTTCAAAATGCAGTAACAAAGCATGTTGTCTCTTCAAACTTCATCCCAAAATACTTGTATTGTTTATGGTGGGGGTTGCAGCAATTAAGTTCTTACGGACAAAACCTAGAAACGAGCACTTTTATTGGAGAAACGTCATTTGCTATTGTCATTGCCATATTGGGTCTTGTATTGTTTGCCCATTTAATTGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGACATCGCCAACTCCCTGAAGATTTGAGATTTCGCGTTCGACGATTCGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGACGAAGAAACCATTCTACGTGCATTGCCTGCTGATCTTCGCCGTGATATCCAACGCCATCTATGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCAATATGTGAGCGGCTGGTATCTTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGGGACCCCGTATCTGAAATGCTCTTTATCATCCGAGGTAGACTTGACAGCTCTACGACAAATGGTGGCCGGACTGGTTTCTTCAACTCAATCATATTGAGACCTGGGGATTTTTGTGGCGAGGAACTACTTTCTTGGGCATTACTCCCAAAATCAACCATGAATTTGCCTTCTTCAACTAGGACTGTTAAAGCACTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTCGCTAATCAATTTAGGCGCCTCCACAGCAAGAAGCTACAGCACACCTTTCGATTTTACTCTCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGAAGGTTTGCCAAACATCTCAATATGAGGGAGTCGCTTCCTTTAGATGAGACGGTGGCCACTGAGAGAGAACATGAAGAGGAATATCAATCTCGTCCAAATACATCTCAAGCTAAAATGAACCTTGGAGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTAAAGATGAAAGATGACCTGCCTAAGCTACGAAAGCCTGAAGAACCCGACTTCTCCACCGAAGCAGACGATGATTAG

Protein:

Promoter(3k):

>AM06G017650.1
TTCTTATCATTAATTTCGTGCTCAGCCAGCCGGGTGAGCTCTAGTTCATGCTCTTGAAGTTTTCCAAATAGAGTGGCAAGTGACATGGTAGCTAAATTTCTCGATTCAGCTATAGCAGTTACCTTGGGTTGCCATTCTCGATTCAAACATCTCAGAACTTTGTTGATTAGATCCTCAGCAGGGAATGACTTTCCTAACAAGCTTAGTTGATTCACTATGTGAGTGAACCTCTTTTGCATTTCCGGTATTGTTTCACCTGTATTCATTCTGAACAGCTCGTACTCTCTGATAAGGGTGTTGGTTCTTGCTCTTTTAACCTCACTAGTACCCTCATGAGCTACTTGAAGATTATCCCACATTTCTTGAGCAGATTTACAGTTTGAAACTCTAAAAAATTCATCAGGACTCAAAGCAGAAGTAATTATGTTTTTAGCCCGCAGATTATGTTGAACTTTTCTCTTTTCCTCATCAGACCATTCATTTCTCCCTTTAATTGTAAGAATACCATTTACTATGTGCGTGGGGACATAGGGTCCTTTTTCCACAACATCCCAAACATCTAAGTCTACCCCTTCAATAAATATTCTCATTCTTTCTTTCCAGTATGCGTAATCTTTGCCGTTGAATCCCGGAGGACGGGTAAGAGAAGCACCTTCTTGCGTCGACCAACCTGAAGCCATTACTCTTGAAGCTGCTAAGCCCTTTATACAAGAGTCTAGCTCTGATACCACTTGCAGCCAAGTGGCTTCAGTCTCAAGAGGAGGGGGGTGAATTGAGATTTAAAAACTTTTGAAAACTTTTTCCCCTTTTCAATGACTTAGATTAATTTTCGTACAGGTTAAGTGGAAGCGAAGGAATTAGAAAATAAAGCAACAAAGAACATAGTAGATTTATACTGGTTCGGTCACCTCCCAGTGACCTACGTCCAGTCCTCACACCCTTGTGAGATTTTCCACTAACACAACAAGACTTACGGGTGCCTTGGAAACCTTTACAGACTCAAGCACTCTTCTCCTAGGATACCCCACCTATGAAGAGCCCTCAAATCTATTACAACAATAACAAGAGATACCCCACCCCTGTTACAACCAGTTGCCCCAGAAAGATACCCCACTTCCTAGTACAAACAACTACCCTAGAGAGATACCTCACTCCCTAGTACAAATCACAACAAATAAACAATTACAAAAGTAAAGACCAAAATACCTCTAATGTAGGCAGATATTCCAACTTGAAGATTCCAACCCTGACTAACCCTTGCGAGAGATCAGCTCTGACGGACCAACAGTGCGTGAAGAGCAGAAATGAAAATGTAAAGGGTTTTTCAAAATGATGCAATTTGATCGTGAGAATGGGTTGTAATGATTGAAGAGTATGAAGCCTCTATTTATAGGCTATGAAAAAAATGTTACCGTTGGAACAAATATAGAAGTGTCAGAATCGATTGTGTGCTTGAATGCACTAAGAGTGAAAATCGATTTTATGCCTAAGTAGATCTAGGATGAGAAATCGATTATGTGTTTGTTTGAAAATAGATGAAATCGATTTTGTGCTTCTTTAAAAGATAAAAATCGATTATGTGCTTCCTTAACATAAAGATAAAATTGATTATGCGCTTGAGTATGTTTAATGGGAAAATCGATTCTTGCTTGTTTAGAAAGAGATGCAAATCGATTGTATACTTAGTAAAAACAATAGGAATCAATTCTTTGCTTTGAAAGGGAGTTTAGGAATCGATTATATACTTTCATATTGAGTTAGAAATCGATTTTGATGTTTAGTTAAAAGTAGTGAATCGATTTCTTTCTTTTTCAAAATGGTTTTTGAGTTTACGTGTGCATGCATGCAATTTGAAAAGCTAGTGAAGACGTGAGACTTTGAGAGATGAGCTGGCCCTCGGAAGAGCTTACACTTTTTCCTAAGACAATCCCCAAACCCTAAGGACTACCCTTATTTCTTGAGACTTCAATTCTTGAGCTTGATCGTCTTGGATTGTGACTTTAGATACTTTGTTACTTTCATCAACTTTGACCATCAACTTTGGCTTTGTCTTTTTCATCATCAAAACCTAACCTGCAATATAAGTTACATACAAGATATCCACATTCTCCCCTTTTTTGATGATGACAAAACTTTACTCATCTTAAGGTGGGAGGTTAGTTCATCAAACAAAATAATGCATACATATATATGTGATTATACTCCCCTTACTTGATGCTCCCCCTGTTTCATTTACTATGTGCAAAGTGACAATATTTCTCCCCTATATGTTTAATATGACAATATTATATGCTATGACAATGTTATGCTTATTCTATATGCTTAATGCAACACTATATTTCTCCTCCTTTTTGTCATGATCAAAAGGGTCGACATATGATAAAGTTTGCGAATCTAAACAACATTTGTTTCATTCAAATAGAAGAGGAATCAATGATTCCAAGTTCTCTTTGAATGAAAAAGAAGCTTTTTTTTGTAAAGGTTTCGTGAAAATATCAGCTAGCTGTTTTGACGATTCAACAAATTCAATCACACAATCGCTTTTTTGGAAATGATCTATAAAAAAATGATGTCTAATCTCTATATGCGCTTGGTCCTAGACTGCTAAAGGGGTTCTTTGTAAGAATGAATCCTTAACCAGTGAAATGAGTTTTAAAAGCATTGATTATCAGTAAAGTAAGATCTTGAAAAAATTCTTGAACAAATGAAATGAGTTTTAAAAACATTGATTATCATTATCAGTAAAGTAAGATGTTCCCGAATTAAAGTGAACGCTAAAGTCAACAATTGTTGACTTATTTTGTCCTGTCTCGTGGTGTTGTCGTCTGAGTTCTGAGGTTGCGGTTTCAAGAACACCTCCGTAAAAGATCCCTACTCTGTTGCAAGTTGCAATTCTGATTCTCAATCCACACAACAAATCCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCGATACCATGTTAGGGTTTTAAAGGATCTGATTGAAGCTTCCGCTTTCCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	88	411	3.80E-30
PF00027.32	cNMP_binding	508	596	5.60E-08

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0006396	RNA processing	Biological Process
GO:0030553	cGMP binding	Molecular Function
GO:0005516	calmodulin binding	Molecular Function
GO:0004000	adenosine deaminase activity	Molecular Function
GO:0003723	RNA binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR003938	Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0A8B8K7U8	_

SwissProt

SwissProt term	Description
CNG17_ARATH	Cyclic nucleotide-gated ion channel 17

KEGG

KO	Description	Enzyme
K27629	cyclic nucleotide gated channel 17
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G30360	cyclic nucleotide-gated channel 17
Medicago sativa L.	MsG0280008923.01.T01	_
Oryza sativa L.	LOC_Os02g54760.1	cyclic nucleotide-gated ion channel 14, putative, expressed
Cucumis sativus L.	Csa002075	_
Glycyrrhiza uralensis Fisch.	Glyur000915s00038247.1	_
Codonopsis lanceolata	Cl_chr02_32730T	_
Arachis hypogaea L.	AH03G18040.1	Probable cyclic nucleotide-gated ion channel 17 like

Expression pattern