Gene detail

Detail information of Am06G017020.1 Annotation

Gene ID	Annotation
Am06G017020.1	KNOTTED1-like homeobox gene 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G017020.1	mRNA	Chr06	80126882	80132220	-

Sequences

CDS:

>Am06G017020.1
ATGGCTTTTCATCACGACCATCTATCACACGAAATTACTTTTCAGTCTTTCACAGAGGAGCAACAGTTAAGTCAAGACAGAGACATGCAACGGATGCTACCTTTCTCCGGCGCCGGCGCCGGCGGTGGAGCTGCGCCGACGTGGCTCAACAACGCTGCATCCCTTAGGCAACAAAATTTCCTCCACTTGCAACCAGATACAGCACAAAACGACGACGTTAGAGGAATTGACATGATGGAGAAAAGCAGGGATCGGAACCGGACGGAGAGTAACACGGAACCGGAGGAGTTAGCAGAATACAAAGCAGACATTTTGGGACATCCTTTGTACGACCAGCTTCTATCAGCTCACGTTTCGTGTTTGAGGATAGCAACGCCAGTTGATCAGCTTCCTCGGATCGACGCGCAGCTTCAACAGTCGCAGCGCGTGGTTGATAAATATTCTTCCCTCGTCAATGGTGTTGTCGATGAGAAGGAGCTCGATCAATTCATGACGCATTATGTTCTCCTGCTGTGCGCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGCTATGGAAGCTGTTATGGCTTGTTGGGAGCTTGAGCAGTCTCTACAAAGCTTGACAGGTGTATCACCTGGTGAAGGAACGGGTGCAACAATGTCAGATGATGAAGAGGACCAAGCAGAGAGCAATGCGAATATGTACGAAGGAAGCTTAGATGGCGCTGATAGTCTCACATTTGGTCCTCTTGTTCCCACTGAAAGTGAAAGATCTTTGATGGAGCGTGTCAGGCAGGAGTTGAAGCATGAACTCAAACAGGGTTACAAGGATAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGAAGAGCGGGAAAGCTCCCTGGTGACACTACCTCCCTTTTGAAAGCTTGGTGGCAGTCTCATTCTAAATGGCCTTATCCCACTGAAGAAGACAAAGCAAGGTTGGTCCAGGAAACAGGACTGCAATTAAAGCAGATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCTTCTTCCACTGGCACCAAAACCAAGCGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA

Protein:

Promoter(3k):

>AM06G017020.1
CGGGGTATTTTCGGAAGTCAATTTTGACTTCCGAAAATACCCCGTTTTGAGGTGATACCCCGTTTTGAGGTGTTTCCGAAAATCCAAAAATTTTTCCTTCCGCATTTACCTGTATTTCCTGAAATTTTGTTTTTTTTTTTTAAAATTTCGTTTTTTAATTTGTTTTTTTTTTTGCTTTTTAGTGGCAAGACGTGCAGGACGATTAGAGCGAGACGAGTCTTCCGGAGCAGCACTAGGAGATGCAGATCAAACTCCTCCTGCTCCTAGCACCAGGACGAGGATTTGGCTGGTCACGCTTCTGAGCGTCAGAGGCGTGTCCGTGAGCATGAACAGCAGGAGGCTGAGCCTGCTTAGCAGTATCATGCATGAGCCTGAGCCTGCTCAGCAGTATCATGAGCCTGAGCCTGCTCAGCAGTGTGAGGAGGCTTAGGCATTTCAGCAGTATGAGGAGACTGAGGCTGTTCAGCAAATTCTGTTGCACCGTTTTCATGTCCACGTGGTCTCCAGGCTACAGTTGGGACAGGTAATACTTTTAATAATTAATTTATTTTTTTAACCAATAATTAATTACTTTTATTTAATATGTTTTAATTTATATTTTTTTTATACAGGACCGTGGTAAAGTTAAGGTGGCATCCCATGGTTTGAAGGTATCGAGGTTTCGACCTCTGCAGCACCACCCACATATACACAGATGGCTAGAGCAGACCCGCCTGTTGGAGCTTGACATCACACCTCTCAACAACATCAACCACGGGCTGATATCGTCTTTTGTGGAGAGGTGGCATTCTGAGACCAGCTCATTCCACATGACGTTGGACGACGTGTCCGCGTTGCAGCACTTGCCGCTCACCGGCACATTTTTGGATCATGGGTTGTATTTTACTGAGGCTGATGCCATTGCAGCTGGAGTAGTTGTTGGGTATAGACCACGACTCTTGCTGGCAGGAGTGTCGGTTCACTAGGGGACCGAACTTCGGATTTAGTTTTTTGGAGCAGGCATACTGAGCTAACATGGAGGCTGGCTTTCTTGATCATGCTGCACGGTGCTATTTGTTACTCTTGTTAGGCTATACCATCTTTGCCGACAAGAGTCACACATATGTGCCCGTCAAGTGGGTCACTCTTATTGCGGATTTTGAGCGTTGTGGCCAGTGGGCTTGGGGTCCTGCTGCTCTGGCCATTCTATACGAGCAGCTCAACGACGCCTGTTTTTGAGAGACATCGCAGATTGGCGGATACGCTTTTCTGCTACAGGTAATAATTAATTACTTTTATTTAGTGTTGGATTTATGAGTACTTCCCCACCATCGTGGTGCGCAAAGACTTCGGTGCGTCTGAGCGTCCACGTTGCAGCAGGTGGGGGAATCAAAAGTGCGACACTGTCAAGCTTATAGAATTTCGGGGGCAGCTGGATGAGTTAGGACGGGAGGAGGTCATATGGAGGCCTTGGGAGGACCACAGAGAGCACACACCATTTTCACAGATTGCTCTTTTCAGAGGTTACCTGCTCTGGGGCTCCATCACTGTGCCATATATGCCAGACAGGGTCCGGTGGCAGCTTGGATACATCCAGCAGATCCCTCGCCCGCCTCTTTTGTTTGGTTCCTCACCTCCATTTACAGCGGACATTTTACAGCAGTGGTTGTTCTACGTTGGCCCGGCGCGGACTTTCAGGAACACTTCTAGACGGACCCTCCTGTCGGGTGAGTGCGACCAGGATTACCTACCATGGTACTTAGAGGTGTCTATTCCCCGTCTCACTCCGGCACCGCCTCTACCTCCAGAGCATGTACCAGATCAGGACCCAGCAGCTGAGGATATTGGCCCACGGACCATGGAGGATAGGCTCCAGACTATAGCGGGACATATCTGTCATGTCATGGGACTCGAGGGCCTTCTAGCTAAGGCATATGAGAGACTCTTATGTGCTTTAGCTGATTGTGACATTAACGTGTAATTGTATTTTTTTCCGTATTTTTTATGGTATTTGTACTGTACTCGTATATTTTTTATGGTATTTCGTATATTATCGTAGTTTAGCGAATATCGTTATTTATCGTACTAATTTTAATTTTTCAATAAAAAAAGGTTTTTGAAAAAAGTTCCGAAAATACAGACATTTTCGGAAAGCATTTTTTTAAACTTTCTGGAAACACCTCAAAACAGGGTATTTCTGGAAAGCATTTTTTAAAACTTTCCGGAAACACTTCGAAACGGGGTATTTCCAGAAGTCAAAATGGCTTCCAGAAATACCCCGTTTTGAGGTGTTTCTAGAAAGTTAAAAAAAATGCTTTCCGGAAATGCTCTATTTCCGGAAATTTTAAAAATAACATTTTTTTATTAAAAATTCGGGATATTTCGGGGATTTACATTAAAATGGGGGGATAGAAGAAGGGGTATGAAATATAAAACCCTATAAATTTTTAAGGTGTGTTTGGCCGATAGATTACAAAAGGGTTGTATTACCGCTTCTCTATATATAATTAAACAAAAAAGAATGAGATATTAATATTTGTGTTATATGAAAATCTCCAATAAGGTAGCACCCCAAATGTCCCGAGTAGATATAGCTCATGAGCTAAGGGATATCGAAGAAGTGCACCAAAAAGTACAAAAAGGAGGTCTCGAATTGAAACTCGAGAAACTAACATTTCTCTCTTCCCCACTAACATTGCTTATAAAAGAAAAGATAGCACCACAAATCCCTCCACGTCATCATCAATCCCAACCTTGGATTGTTTCCCATTCCATCCCTTGATCTTCGTGTCAACCCTTCATTGTCTTACCCTTACCCTTGTAGAAAAGTGCTTTTCCAAACCTCTTCTTCCTTCCACCTTCACCAGCCCCTATCTATGGCTTCCACTCCTAGCTACTTCACTTCTTCTCCGATTTCCACCGCAAGTTCTCAACCCTCTGTTTAATTTCTATCCTATCAAATGTAGTCACAGCGAAATATACAAGCAAAAGAAGAAAAAAGCATAAACAAAAAATAAGCAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03791.16	KNOX2	155	204	6.90E-20
PF05920.14	Homeobox_KN	302	341	6.50E-18
PF03790.16	KNOX1	100	141	8.10E-18

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-KNOX

Gene Ontology

GO term	Description	Category
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0005509	calcium ion binding	Molecular Function

InterPro

InterPro term	Description
IPR005541	KNOX2
IPR005540	KNOX1
IPR009057	Homeobox-like domain superfamily
IPR008422	Homeobox KN domain
IPR001356	Homeobox domain
IPR005539	ELK domain

trEMBL

trEMBL term	Description
A0A1S2Z2W6	_

SwissProt

SwissProt term	Description
KNAT3_ARATH	Homeobox protein knotted-1-like 3

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G25220	KNOTTED1-like homeobox gene 3
Medicago sativa L.	MsG0280008879.01.T01	_
Oryza sativa L.	LOC_Os08g19650.1	homeobox protein knotted-1, putative, expressed
Cucumis sativus L.	Csa014889	_
Glycyrrhiza uralensis Fisch.	Glyur002834s00043435.1	_
Codonopsis lanceolata	Cl_chr08_27790T	_
Arachis hypogaea L.	AH03G27660.1	Homeobox protein knotted-1-like 3 like

Expression pattern