| Gene ID | Annotation |
|---|---|
| Am06G016650.1 | Pentatricopeptide repeat (PPR) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G016650.1 | mRNA | Chr06 | 74307921 | 74311865 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 232 | 272 | 3.70E-164 |
| PF13041.9 | PPR_2 | 267 | 316 | 3.70E-164 |
| PF13041.9 | PPR_2 | 374 | 422 | 3.70E-164 |
| PF13041.9 | PPR_2 | 412 | 456 | 3.70E-164 |
| PF13041.9 | PPR_2 | 443 | 491 | 3.70E-164 |
| PF13041.9 | PPR_2 | 514 | 562 | 3.70E-164 |
| PF13041.9 | PPR_2 | 583 | 632 | 3.70E-164 |
| PF13041.9 | PPR_2 | 618 | 663 | 3.70E-164 |
| PF13041.9 | PPR_2 | 724 | 769 | 3.70E-164 |
| PF13041.9 | PPR_2 | 764 | 806 | 3.70E-164 |
| PF13041.9 | PPR_2 | 792 | 841 | 3.70E-164 |
| PF13041.9 | PPR_2 | 827 | 860 | 3.70E-164 |
| PF12854.10 | PPR_1 | 263 | 295 | 6.60E-160 |
| PF12854.10 | PPR_1 | 298 | 329 | 6.60E-160 |
| PF12854.10 | PPR_1 | 337 | 366 | 6.60E-160 |
| PF12854.10 | PPR_1 | 405 | 436 | 6.60E-160 |
| PF12854.10 | PPR_1 | 510 | 542 | 6.60E-160 |
| PF12854.10 | PPR_1 | 545 | 577 | 6.60E-160 |
| PF12854.10 | PPR_1 | 614 | 646 | 6.60E-160 |
| PF12854.10 | PPR_1 | 722 | 747 | 6.60E-160 |
| PF12854.10 | PPR_1 | 753 | 785 | 6.60E-160 |
| PF12854.10 | PPR_1 | 788 | 817 | 6.60E-160 |
| PF12854.10 | PPR_1 | 823 | 856 | 6.60E-160 |
| PF01535.23 | PPR | 270 | 300 | 2.80E-134 |
| PF01535.23 | PPR | 305 | 331 | 2.80E-134 |
| PF01535.23 | PPR | 376 | 403 | 2.80E-134 |
| PF01535.23 | PPR | 411 | 441 | 2.80E-134 |
| PF01535.23 | PPR | 446 | 476 | 2.80E-134 |
| PF01535.23 | PPR | 516 | 546 | 2.80E-134 |
| PF01535.23 | PPR | 621 | 651 | 2.80E-134 |
| PF01535.23 | PPR | 760 | 790 | 2.80E-134 |
| PF01535.23 | PPR | 796 | 825 | 2.80E-134 |
| PF01535.23 | PPR | 830 | 860 | 2.80E-134 |
| PF13812.9 | PPR_3 | 221 | 280 | 1.70E-88 |
| PF13812.9 | PPR_3 | 257 | 315 | 1.70E-88 |
| PF13812.9 | PPR_3 | 396 | 453 | 1.70E-88 |
| PF13812.9 | PPR_3 | 505 | 556 | 1.70E-88 |
| PF13812.9 | PPR_3 | 752 | 802 | 1.70E-88 |
| PF13812.9 | PPR_3 | 815 | 861 | 1.70E-88 |
| PF17177.7 | PPR_long | 389 | 499 | 2.90E-45 |
| PF17177.7 | PPR_long | 563 | 649 | 2.90E-45 |
| PF17177.7 | PPR_long | 736 | 813 | 2.90E-45 |
| PF17177.7 | PPR_long | 761 | 861 | 2.90E-45 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | Molecular Function |
| GO:0000963 | mitochondrial RNA processing | Biological Process |
| GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | Biological Process |
| GO:0006457 | protein folding | Biological Process |
| GO:0008380 | RNA splicing | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| A0A9D4YNB7 | _ |
| SwissProt term | Description |
|---|---|
| PPR50_ARATH | Putative pentatricopeptide repeat-containing protein At1g19290 |
| KO | Description | Enzyme |
|---|---|---|
| K17710 | pentatricopeptide repeat domain-containing protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G19290 | Pentatricopeptide repeat (PPR) superfamily protein |
| Medicago sativa L. | MsG0280008754.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g19390.1 | PPR repeat containing protein, expressed |
| Cucumis sativus L. | Csa017845 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001074s00039525.1 | _ |
| Codonopsis lanceolata | Cl_chr02_21670T | _ |
| Arachis hypogaea L. | AH10G10780.1 | Putative pentatricopeptide repeat-containing protein At1g19290 like |