| Gene ID | Annotation |
|---|---|
| Am06G016580.1 | phytochrome E |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G016580.1 | mRNA | Chr06 | 73472257 | 73478406 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00360.23 | PHY | 405 | 580 | 6.30E-54 |
| PF00989.28 | PAS | 610 | 725 | 6.60E-46 |
| PF00989.28 | PAS | 741 | 860 | 6.60E-46 |
| PF08446.14 | PAS_2 | 76 | 189 | 6.60E-42 |
| PF01590.29 | GAF | 222 | 389 | 1.40E-34 |
| PF02518.29 | HATPase_c | 994 | 1102 | 4.40E-11 |
| PF08448.13 | PAS_4 | 619 | 727 | 1.10E-09 |
| PF00512.28 | HisKA | 886 | 945 | 2.00E-09 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0000155 | phosphorelay sensor kinase activity | Molecular Function |
| GO:0009584 | detection of visible light | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0000160 | phosphorelay signal transduction system | Biological Process |
| GO:0006355 | regulation of DNA-templated transcription | Biological Process |
| InterPro term | Description |
|---|---|
| IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| IPR043150 | Phytochrome, PHY domain superfamily |
| IPR013515 | Phytochrome, central region |
| IPR013516 | Phytochrome chromophore binding site |
| IPR016132 | Phytochrome chromophore attachment domain |
| IPR044767 | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain |
| IPR012129 | Phytochrome A/B/C/D/E |
| IPR001294 | Phytochrome |
| IPR013654 | PAS fold-2 |
| IPR013767 | PAS fold |
| IPR035965 | PAS domain superfamily |
| IPR000014 | PAS domain |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR003594 | Histidine kinase/HSP90-like ATPase |
| IPR005467 | Histidine kinase domain |
| IPR029016 | GAF-like domain superfamily |
| IPR003018 | GAF domain |
| trEMBL term | Description |
|---|---|
| A0A8B8M076 | _ |
| SwissProt term | Description |
|---|---|
| PHYE_IPONI | Phytochrome E |
| KO | Description | Enzyme |
|---|---|---|
| K12123 | phytochrome E |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G18130 | phytochrome E |
| Medicago sativa L. | MsG0280008743.01.T01 | _ |
| Oryza sativa L. | LOC_Os03g19590.1 | phytochrome B, putative, expressed |
| Cucumis sativus L. | Csa017326 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur003032s00041044.1 | _ |
| Codonopsis lanceolata | Cl_chr03_09500T | _ |
| Arachis hypogaea L. | AH13G29600.1 | Phytochrome E like |