| Gene ID | Annotation |
|---|---|
| Am06G016550.1 | Pectin lyase-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G016550.1 | mRNA | Chr06 | 73270330 | 73273661 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00295.20 | Glyco_hydro_28 | 55 | 376 | 1.20E-93 |
| PF12708.10 | Pectate_lyase_3 | 27 | 74 | 1.30E-14 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0004650 | polygalacturonase activity | Molecular Function |
| GO:0005975 | carbohydrate metabolic process | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0046576 | rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR006626 | Parallel beta-helix repeat |
| IPR000743 | Glycoside hydrolase, family 28 |
| trEMBL term | Description |
|---|---|
| A0A1S2XH07 | _ |
| SwissProt term | Description |
|---|---|
| PGLR_PRUPE | Polygalacturonase |
| KO | Description | Enzyme |
|---|---|---|
| K01184 | polygalacturonase | [EC: 3.2.1.15] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G43880 | Pectin lyase-like superfamily protein |
| Medicago sativa L. | MsG0280008741.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g43490.1 | polygalacturonase, putative, expressed |
| Cucumis sativus L. | Csa012661 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur002664s00046080.1 | _ |
| Codonopsis lanceolata | Cl_chr08_29560T | _ |
| Arachis hypogaea L. | AH13G57550.1 | Polygalacturonase like |