| Gene ID | Annotation |
|---|---|
| Am06G016470.1 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G016470.1 | mRNA | Chr06 | 72253839 | 72257982 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF01535.23 | PPR | 428 | 457 | 6.30E-52 |
| PF13041.9 | PPR_2 | 124 | 171 | 2.20E-44 |
| PF13041.9 | PPR_2 | 227 | 276 | 2.20E-44 |
| PF13041.9 | PPR_2 | 426 | 472 | 2.20E-44 |
| PF12854.10 | PPR_1 | 426 | 453 | 6.20E-24 |
| PF20431.1 | E_motif | 548 | 604 | 5.30E-15 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0009451 | RNA modification | Biological Process |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0016020 | membrane | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| trEMBL term | Description |
|---|---|
| A0A1S2XEX4 | _ |
| SwissProt term | Description |
|---|---|
| PPR8_ARATH | Pentatricopeptide repeat-containing protein At1g03540 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G03540 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Medicago sativa L. | MsG0380016846.01.T01 | _ |
| Oryza sativa L. | LOC_Os06g40860.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa003360 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000699s00025423.2 | _ |
| Codonopsis lanceolata | Cl_chr05_15640T | _ |
| Arachis hypogaea L. | AH14G39420.1 | Pentatricopeptide repeat-containing protein At1g03540 like |