Gene detail

Detail information of Am06G016310.1 Annotation

Gene ID	Annotation
Am06G016310.1	periodic tryptophan protein 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G016310.1	mRNA	Chr06	70240874	70247114	-

Sequences

CDS:

>Am06G016310.1
ATGAACTTCAGGTTCCAGAACCTTCTGGGTGCTCCCTACAGAGGTGGCAACGCCGTTATCTCTAACAACACCCTGCTACTCTCACCCGTCGGTAACAGAGTATCCGTCACCGACCTCCTCAAGTCCGAAACCACAACCCTCCCTATCCAATCCTCCTCCAACATCTCTCGCATAGCGGTTTCCCCCGATGGAACCTTCCTCCTCGCCGTCGACGAGCGTAGTCGCTGTCTCTTCATCAACCTCCGCCGCCGTGCTCTCCTCCACCGTATCACCTTCAAGCACCGCATCGCCGCCGTCAAATTCTCCCCTGATGGTGCTCTCATCGCCGTCGCCGCCGGAAAACTCGTCCAGATCTGGCGCTCCCCGGCTTTCCGCAGGGAATACTTCCCATTCGAATTGGTCCGAACTTTTGCCGATTTTGATGCCAAAATCACCGCATTTGATTGGAGTCCTGATTCAAACTACTTGCTGGTATCGTCTAAGGACCTCACTGCGAGAATCTTGTACATGAAGAAATTGAATGAAGGTGTTAAGTATAAGCCTTTTTTGTTTTTAGGTCATAGGGATTCGGTTATAGGTTCATTCTTTGGTGTTGATTCTAAAACTAATAGGGTTACTAGAGTTTATACGGTTACTAGGGATGGTTATATTTTAAGCTGGGGGTTTTCCGACGATGAGGGATTGTCGGCTCCGCCATCGCCGGGGACACCAGATAGGGATATGGAAGGGGATTTGAAGGTTGGGGATGATGGTGATGTGAAGAAGAGGAAGGAACGTGAAATTGAGGATGAGGAAGGGTACTTGTGTAGAGGGAAGTGGGAGTTGTTGAGGAAGGACTGTTTTAATCAAGCGCCGGCAAAGGTTTCCACGTGTGACTATCATAGAGGGTTGGACATGGTGGTTATTGGATTTTCTAATGGCGTGTTTGGGTTGTATCAAATGCCAGAATTTGTGTGTATTCATTTGTTGTCCATATCAAAGGAAAAGATCACTACTGCCTTGTTTAATGAACTTGGAAATTGGCTGTCCTTTGGCTGTGCCAAACTGGGCCAGCTTCTTGTGTGGGAATGGCGATCTGAGAGCTATATTTTGAAGCAGCAGGGTCATTACTTTGATGTTAATTGTGTTGCGTATTCGCAGGATTCTCAACTCCTTGCTACTGGAGCAGATGATAACAAAGTGAAGGTTTGGACTGTTTCCTCGGGCTTTTGTTTTGTTACATTTTCTGAGCACACCAATGCTGTTACGGCTCTGCATTTTATGGCAAGTAGCAATTGCCTGCTTAGTGCGTCGCTTGATGGGACTATTCGAGCGTGGGATTTATTACGTTATCGGAATTTTAGGACATTTATAACCCCTTCTTCAAGGCAGTTTATTTCTTTGGCAGCAGATCAAAGTGGTGAAGTGATATGTGCAGGCACTTTAGATACCTTTGAGATTTTTGTTTGGTCGATGAGAACTGGCCGGTTGTTGGATGTGCTCAGTGGTCATGAAGCTCCTGTTCATGGGCTAATGTTTTCTCCTACAAATGCTATATTGGCTTCATCATCATGGGACAAGACTGTTCGGTTGTGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACATGGCCTCACACACATGATGTTCTCACAGTAGTTTATCGTCCAGATGGAAGGCAGATAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGATCCAATAGATGGTGTGCTGATGTACACCATAGAAGGTTCTAGAGATATTGCTGGAGGTCGTCTTATGACTGACCGTAGAACAGCTGCTAAATCAAGTTCAGGGAAGTTCTTCACAACCTTGTGTTACTCGGCCGACGGAAGCTACATATTAGCAGGGGGCACTAGCAGATATATCTGCATGTATGATGTTGCAGATCAGGTATTGTTGCGACGTTTCAAGATAACTCACAATCTTTCATTAGATGGAGTTCTTGACTATTTAAACTCTAAGAATATGACAGAAGCTGGCCCTCTAGATTTGATTGATGATGATAACAGTGACATTGAAGAAGGTGTTGAAAAACAAACACGCGGGAAAATTGGATTTGATTTACCTGGATCATTGCCTAACCGCGGAAGACCTGTTATTCAAACAAAATGCCTGAGAATTGCACCTACAGGGCGGAGTTTTGTAGCAGCAACGACTGAGGGAGTTTTAGTTTATTCTATTGATGAATCATTCATATTTGATCCAACTGACCTAGACATAAATGTTACACCAGAGGCTGTTGATGAAGCTCTAAATGAAAATCAACCAAGTCGGGCTTTGATCCTTAGCCTTCGCTTAAATGAGGACTCTTACATTAAAAAATGTATCTTTGCTGTTAGTCCAGCTGATATTCCAGCAGTTGCCACATCAATCCCTTACAGATATCTCCAACGATTAGTTGAGGCATTTGCAACTCTTCTAGAAAACTGCCCACATTTGGAATTCATACTTCGATGGTGTCAGGAGCTATGCAAGGCCCATGGGAATTCTATTCAGCAGAACTCTAGAAATCTTCTCCCATCATTAAAGTCGTTGCAGAAAGCAATTACTAGTATACATCAGGATCTAGCTGATACATGCTCCTCCAATGAGTATATGCTGCGATACTTATGCTCTTCTGGTGCCAATAAATAA

Protein:

Promoter(3k):

>AM06G016310.1
TGAACGTAATGCAGTGCCTATTTATAGGCTATGAGAAAATCAAGTTTACGTTGAAAATAGTGTAGGAATCGATTCTTTGTTGAAAGCATTTGATCTAGGAATCGATTCATTTAAGTGAGGAATCGATTTTGACTTTGTTTGAAAAATAGGGACAATCGATTCTTGAGAACCACGGAGAGCTAGGAATCGATTCTTTACTATGTTAAAACTTGTATGAATCGATTCTCAGCTTGCCTGAGACATGTAGGAATCGATTCTCAGCTTAGTTTAAAAGTGTGTGAATCGATTCTTTGTTTGAGAATGTTTGGCCTGAAAATCGATTTATGCAATGAAACCACATGACCTGACAATCGATTCTTTCTTTTCTGATTGACCTGAAAATCGATTTTGATGTATGTTTATGCATGAGGAAATCGATTTTTATGTTTTTAAAGATGATAAGAATGTTTACGTAAGTATGCATGCATCTTTGAAAAACTTGTGAGTGTGTGAGACTTTGAGATACGAGCTGACCTTCGAAAGAGCTTACATTTTTTCCTAAGATACACCCAAACCCTAAGGACTACCCTTATATCTAAGGACTACCCTTAAACTTGGATCTTCAATTCTTGAGCTTGTTTGTCTTGGATTGTGACTTTGATGTTTCGTCACTTTTATTAACTTTGGCCATCAACTCTGTCTTTGTCTTTTTCATCATCAAAACTTATCCTACAATATTAGTTTACCTGCAATACAAGGTATACACACCTATTACTATTAAATTGATCATGCATTGTGTCACTTCTTCCTCATTGTCACTCATTTTGGAATGGTAATAGGCTCCGGACCTTCACCCCCACCTAGGGCCTTCCCCAAGGGAATCTGTCCCCTCCCCTTACCTCTTTGTTATGTGCATGGAGAAGCTTTCCCGTAGAATTCTGGAAACCATTGAGGATCAACGATGGAAACCGATAAGGTTGTCTAGGACTCGGCCTGCCCTATCCCATGTCTTCTTTGCTGATGATGTGTTGCTCTTCTCAAAAGCTACACCGTCTCAAGCTCATGTGCATGAGGACATCTTCTCCAAGTTTGCTTCGACTTCAAGCCTGAAGGTAAGCATCTCGAAATGTAGAGCTTTCTTCTCCCATGCAGTTACTCGGTCAAAGGTTGAGAACATTGTCTCCATTACCAGAATTTGGAGTACACCTTCCCTTGATAAATACACTGGGTTCCCCATGATTCATGGTAGATTAAGGAAATTCGATTATGACTTTTTGATAGATAAGGTCCACTCCCGGCTAGCCTCTTGGAAGAATAAGCTTTTAAGTAAAGCTGGTAGAGTAACTCTTGCAAAAAGAGGCTCTTATACTCTGACCCTTTGTGTTTTACTACAGGGCTCTGGTGTATTTGGAAAGCTAGGAATGTTATATATAATGCTCAAAAACAGGTTCATCTTTACTAGTTGCAGCTATCTATAAGGAGTTTCCACCTCCACCTTTCTAAGTCTTTTACTGCGTCGGCCTCCCCTCGAGTTCAGCAGCGTTGGACCTCGTGGCACCCTTCCAAGGATTATGCTAATATTCTAAACGTGGATGGCAGCAGCTTCGGGAATCCTGGTAGACCGAGGATTGGTGGAGTACATGGACCTCAGATGGTGTTTGGCTTTGTAGCTTTTCAGGCTTCATTGGAACCACAAACAGTTTGCGTGCTGAATTACTTCTGATGCTCCATGGTTTGCAACTAGCTTGGGATAGAGGTTACCACAACCTTATTTGCTATTCGAACTCTCTCAACGCCATCAACTTGGTTTCCAACCCTCCTGGTGCATGGCATGTGTATGAGACGATCATTCGCAATGTGCAAAACCTAATTGGCAGAGATTGGAACATGCAGCTTATTCACACCCTCCACGAGGCAAACGCTTGTGCGGACTTTTTGGCAAAGCTTAGTGCTTCAAACGATTGCTCTTGGCGCCTCTTTGAGGCTCCTTCGGTCATGGAAGTGTTGCTGACTACCGATGTTGATAAAGTGCCTAGGAATGTCAACGGGGCGGGGCGGGCACGGGTATCACACTACCCAGACCCGCCCCGTTTATTATAAATAGGCTCTGGACCCGTCCCAGACCCGCGCGGGTACCCGTTTAATGGGTTTTAAACGGATATTTTTTTAAACGGGTACCCGCGGGTATTTGTAAATTAATAAATACAAAACTTTTAAAAATAAATTTTGAAATACCATAGAAAATTAGTTTTTTTAACACTATTTTTTGATTCATTTATATAAAAAAATTACGCATTTTGATATGCATTTATCGTATCAACTATTTATTAATATATAATTGTTAATGAATTGAGATAAAAAAACCAAAATTATGATAATAGAAACTTGAAAAATAACAACTAAATATTATCCAAAATATTAGGATAAAAGATACAACAAAATGTGAATAAACATTCACTTAAACAACAACAACAATAGATGATAAAAAAAAGGAAGAAAATAGTTGTGTGATGGATTTACTAACGGGTCCGGGCACCCCGCTACCCGGACCCGCCCCGTTTATTGACGAATAGTCAAAATACTCGTTTATTTGGCCCGCGGGTATCCGTTTAACTACCCGCCCCGAACCCGTGACGGGTTTTACCCGCGGGTACCCGCGGGTCCGGGTTTTTTTGACACCCCTAAAAGTGCCTTTCCTAAGGCTCTAGTTTTTTCTTTTCATTCCCTTTATGTACCAAAAAAATAAGTTCACCAAAAATGCAATTAAGTCTAAAAGTTTCTGCAAAATTACTGGTGGAGTTTGCTAAATAATTTATTACTAATGGAGCGAAACTATCCCCACTCTCATATCTAAACGTTACCGTTTTGATTTCGCCTTCGGCAACAGCAAGTCAGTCCCTAAACCCTAAACATCATAAACCTCCATTCCCGCCACTCACAGTGACCAAGCAGAGTTATTAACCTAACGCCACCACCGGAAAGTCCTGGTTCGACTTCTCTTCCTCAAAACAAACCAAAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	367	397	3.10E-39
PF00400.35	WD40	489	526	3.10E-39
PF04003.15	Utp12	771	876	1.70E-26

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0032040	small-subunit processome	Cellular Component
GO:0000028	ribosomal small subunit assembly	Biological Process
GO:0009553	embryo sac development	Biological Process
GO:0010119	regulation of stomatal movement	Biological Process
GO:0009744	response to sucrose	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR007148	Small-subunit processome, Utp12
IPR011044	Quinoprotein amine dehydrogenase, beta chain-like
IPR027145	Periodic tryptophan protein 2
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A2Q5D0	_

SwissProt

SwissProt term	Description
PWP2_ARATH	Periodic tryptophan protein 2

KEGG

KO	Description	Enzyme
K14558	periodic tryptophan protein 2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G15440	periodic tryptophan protein 2
Medicago sativa L.	MsG0780039623.01.T02	_
Oryza sativa L.	LOC_Os05g44320.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa002818	_
Glycyrrhiza uralensis Fisch.	Glyur002421s00038665.1	_
Codonopsis lanceolata	Cl_chr02_04950T	_
Arachis hypogaea L.	AH18G17340.1	Uncharacterized protein like

Expression pattern