Gene detail

Detail information of Am06G015040.1 Annotation

Gene ID	Annotation
Am06G015040.1	binding

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G015040.1	mRNA	Chr06	54300981	54330458	+

Sequences

CDS:

>Am06G015040.1
ATGGCGTCCGTGTACATTCCAGTGCAGAATTCCGAGGAGGAAGTTAGGGTTGCTCTCGATCAACTTCCCAGAGATGCCTCTGACATTCTCGATATCCTCAAGGCCGAACAAGCTCCTCTTGATCTCTGGCTCATAATCGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGTCAAATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGAGTATTATGCTGATGTTAGATACGAGAGGATTGCTATTTTAAATGCCCTTGGTGCTTACTATAGCTACCTCGGAAAAATAGAGACGAAACAAAGAGAAAAGGAGGAGCATTTTATTTTGGCAACACAGTATTACAATAAAGCATCAAGGATAGACATGCATGAGCCCTCTACTTGGGTTGGAAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCCGCGTTTAAGATTGTTTTAGATGGAGATCGCGATAATGTTCCCGCTCTTTTAGGCCAGGCATGTGTTGAGTTCAACCGTGGAAGATATTCTGATTCACTCGAGTTGTATAAGAGGGCATTGCAAGTGTATCCCAGTTGCCCCGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTCGACAGGCATTCGAGCGTGTTTTGCAGCTAGATCGAGAAAATGTTGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGGACTAATGAAGCTGCTGGAATTAGGAAAGGAATGGTAAAGATGCAGAGGGCATTTGAGATATACCCGTATTGTGCAATGGCTCTGAATTATCTTGCAAATCATTTCTTCTTCACTGGCCAACATTTTTTGGTTGAGCAACTGACTGAAACTGCATTAGCTGTTACCAATCATGGTCCAACAAAGTCGCACTCTTATTATAATTTAGCACGCTCTTACCATAGCAAGGGGGACTATGACAAAGCTGGGGTGTATTACATGGCATCTGTCAAGGAAATTAGCAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTACAAATAAAATTGGGAGATTTTAGAAGTGCACTTACAAACTTTGAGAAAGTTTTGGAGGTGTACCCGGATAATTGCGAGACACTTAAAGCGCTTGGGTACATATATCTTCAGCTTGGTCAGACTGACAAAGGACAGGAATTTATTAGGAAAGCTACAAAAATTGATCCCCGTGATGCCCAGGCATTCCTTGAACTTGGAGAATTGTTAATTGTTTCTGACACAGGAGCTGCACTGGATGCCTTTAAAACAGCTCGTACTCTTTTTAAGAAGGGAGGTGAAGAAGTACCAATTGAGTTGCTCAATAATATTGGCGTCCTTCAGTTTGAAAAGGGAGAATTTCAGCTTGCTCAACAAACTTTTAAGGAGGCTCTAGGTGATGGAGTTTGGCTTTCATTTATTAACAAGGAAAACAAGTCCTCCATTGATGCTGCTACTTCTACACTTCAATTCAAGGACATGCAATTATTTCATGACCTTGAAAGTAATGGTCACCTTGTGGAATTACCATGGGATAAAGTCACAGTAATCTTTAACCTGGCCCGATTACTTGAGCAGTTGAATGAATCTGGAACTGCAAGCATATTATATCGCCTAATCTTGTTCAAGTACCCAGACTACGTTGATGCATATCTGAGGTTAGCTTCCATTGCAAAAGCTCGGAACAACATTCTGTTAAGCATTGAACTGGTTCATGATGCTCTGAAGGTGAATGACAAGTGTCCAAATGCATTATGCATGCTTGGTGAGTTGGAGTTGAAAAATGATGATTGGGTGAAGGCAAAAGAAACTCTTCGGGCAGCTAGTGATGCCACTGATGGGAAGGACTCATATGCTACCCTTTCTCTAGGAAACTGGAACTACTTCGCTGCAGTTCGCAATGAGAAGAGAAATCCAAAGTTAGAAGCTACTCATTTGGAAAAGGCCAAGGAACTTTATACAAGAGTTTTGATTCAGCATTCTGCTAATTTATATGCTGCCAATGGTGCTGCAGTAGTTTTTGCTGAAAAAGGCCATTTTGATGTTTCAAAAGATATCTTTACACAGGTTCAAGAAGCTGCCAGTGGCAGTGTTTTTGTCCAGATGCCTGATGTTTGGATCAATCTGGCGCATGTTTATTTTGCTCAGGGGAATTTCACTTTGGCTGTCAAAATGTATCAAAATTGCTTGCGGAAGTTCTATCATAACACAGACTCTCAAATACTTCTATACTTGGCTCGTACCCATTATGAAGCCGAACAGTGGCAAGACTGTATTAAAACTCTTCTGAGAGCCATCCATTTGGCACCCTCAAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAGAAGTTTTCAGCATCAACGCTTCAGAAGGCAAAGCGGACTGCAGATGAGGTGAGAGCAACTGTTGCGGAGCTACAAAATGCTGTTCGTATATTTAGTCAATTGTCTGCTGCTTCCAACCTACATATTCATGGATTTGATGAGAAGAAAATTGACACTCATGTTGGATACTGCAACCACTTACTTTCTGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGCGAGGAGCAGCAATTACGGCAGAGACAAGAACTTGCTCGTCAAGTTGCATTGGCTGAGGAAGCCCGGCGTAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGCGAAAGCAAGAGGATGAGATAAAGCGAGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGAACAATGGAAGAGCAGCACACATTCAAAACGAAGGGAAAGATCAGATGATGAAGAGGGTGGGACTGGCGAGAAGAAGAAAAGAAAAGGTGGAAAGAGGAGAAAGAAGGATAAGCACTCAAAATCACGCGATGACACAGAGGAAGCAGAAGTTGATATGATGGATCAACAGGAAATGGAGGATGAAGATGCTGACTTGATAGAAAGAGAGGAGCCTCAAAGTATGATGAATGATGATGTTGAGGACAATGCCCAGGGTCTTCTTGCAGCAGCTGGACTTGAAGATTCTGATGCTGATGATGAACCGGCTGCACCTTCTTCAACCATAAGCCGGCGGAGGCAGGCATTATCAGAATCTGAGGATGATGAACCATTTCAGAGGCAATCAAGTCCTGTAAGAGAAAATTCTGCTGATATGCAGGAGAGTGATGGAGAAATCAGGGATGGGGACAAGACAAATGGAGATGATGCCAGTGATGAGGAGCAGCAATAG

Protein:

>Am06G015040.1
MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPSCPAAVRLGIGLCRYKLGQFEKARQAFERVLQLDRENVEALVALAIMDLRTNEAAGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDFRSALTNFEKVLEVYPDNCETLKALGYIYLQLGQTDKGQEFIRKATKIDPRDAQAFLELGELLIVSDTGAALDAFKTARTLFKKGGEEVPIELLNNIGVLQFEKGEFQLAQQTFKEALGDGVWLSFINKENKSSIDAATSTLQFKDMQLFHDLESNGHLVELPWDKVTVIFNLARLLEQLNESGTASILYRLILFKYPDYVDAYLRLASIAKARNNILLSIELVHDALKVNDKCPNALCMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSANLYAANGAAVVFAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQLRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDEIKRVQQQEEHFKRVKEQWKSSTHSKRRERSDDEEGGTGEKKKRKGGKRRKKDKHSKSRDDTEEAEVDMMDQQEMEDEDADLIEREEPQSMMNDDVEDNAQGLLAAAGLEDSDADDEPAAPSSTISRRRQALSESEDDEPFQRQSSPVRENSADMQESDGEIRDGDKTNGDDASDEEQQ*

Promoter(3k):

>AM06G015040.1
ATTTCAAGTTGCAGACATTTTGACCAAAGCTGTTCCTTCTCCACGCCATCAGTTTCTTGTCAGCAAATTGATGCTCCTTGATGACCCGCATCAATTTGAGAGGGGATGTGAATAAGGAATAAAAGAAGGCTGTAAATAGTAGTTGTAGATTTATTTATATGCTTATGCTTTGGCCCAGGCCCGTTAGGTCTTATTAGAGAAGGCTATTTAAACTCTCTTGTACTTTGTATTCACATCATCGAAAACATTATCAATAAAACGGAACTACAGCTACTCTGTAGTCGCAGACGTAGGCAATCTTTGGCCGAACTGCATAAACAATACCGTGTGTTATGTTTGACAAGCCTGATCTTCCACCCAGCTAACACCAATGCCCGCACTATCACCCACAACCCAAAGTGTAAAGCACATCGTCCTTCTCAGGGTCAAAGACGACACGCACCCCCTCGAAGGTTAACACAATGGTCAACGACCAACGATCCTTAGTTACAATGGAGGAAGTTCGCCACCTCACTGTAGGCTCCTACGCACCAACCAATCCACTATTTCAAATCTTCATTTCACTCACTTGCTCCATTGTCACTACAATTCGAAGCAAGACCTCGAAGCCTATAGGGTACACCCTAGCCACGTCAATGCTGCCCCGAACTCCATTTACCCTATTATCGACGACATCATGGCCATTGATTGGCTTGCTAGGGACTCTACTCTTCCACCACACCTGCCGTCGGGTTCTGGCATTCGGGTGAGTTTCTTGAAACTAAAGGAAGTGTTATCACAATATACACTGAATTGAAATGATGATGAGAGAATAGAAAAGTACACAATTGGATTGTTTACCCAGTTCAGCCAATTTGGCTTACATCTGGGGGACTTGCGATGCACAGTCCAACTTTATTGAGAGATAGAGAAGATTACAGAGAGATTTACAAGGTGTATAACCCTCCCATGGTTTCCCCCTTTGAATGCTCCACCTCACTCTAGAAACCCTAGATCTTGATTCACGAAGCACACCCCAAAGTTGCAGAGAAATATGGAACACACACACTTTCTAATGCATTGAGAGACCTTATAAACTTGGCCTCTGCTAGCTGTTACAAACAGAACATATTCTAACTGATAAAACAGAAAAGAAACTAATCCTAACTGAATGAATGACAAACGGCTAACAGACCCAACTGGTTCAATAATGAATCCCAATAATACCCTTGCAAGACTTCATATATATATATATATTCCACAGATTAACAATCTCCACCTTGGCATGTAGATCAATGATTCCCAATAAAGCCAGACCTAACAGAGCTCATCCAAGAGTACAGTTTTAACCTGTACCAATTTTGAGTAGTTCAAGACAGTGCTTGAACTTTCCCATAGAGACAACCTTGGTCATAAAATTTGAAGGATTATCCGAAGTATGCACCTTCTTTATCTGAACCAAGCCTTTTGATATCGCATCTCTAATCCAATACAGTCTAATGTCAATGTGTTTTGTTCTATCATGGAATGTGTGATTCTTACAAAGGTGGATTGCACTTTGATTGTCACAATACACATTGACATATTCTTGCTCAATCCCAAGTTTTGCAGTGAGTCATTTCAACCACAGAGCTTCTTTGACAGCTTCTGTAATTCCTATGTACTCTGCTTCTGTAGTGGACAGAGCAACTATGTGTTGCAATGATGCTTTCCAGGTGATAGTATTCCCAAATAGAGTGAAGACATAACCTGTTAGAGACCTTCTTTTATCCCTATCACCAGCAAAATCAGAATCAACAAAATCTTGTACAACTTCTGTATTTTTGGTGCACTTGCTATAGACAAGGCCTGTGTTGACAGTGCCTTTTAATATCTGATAATATGTTTTACAGCAAGTCAATGTTGTGAGCCTGAATTGCTCATGTATCTGCTCACTAAGCTTACATAGTGAGCAAGATCTGGGCGTGTACAAACCATAGCATACATGAGACTCCCCACTCCACTAGCATAGGGAACACTGCTCATTTCCTTCTGCTCTTGAGTAGTCTTAGGGCTGTGATAACTTGATAACTTGAAGTAGGATGCTATAGGAAGATTCAGAATCGCCATTTCTTGCTCCAGAATGGCTCTTGATACCAATTGTTATCACAATATACACTGAATTGAAATGATGATGAGAGAATAGAAAAATATATAAAAAACATTGCACTCATATATAAAAAAACACGGGATAAGTGCACAAATTGTTTTTAAATGATACTTTTACCTTTTTAGATTTTAATATTTATCTATTTTTTATTTGAAACTCATTTTTTATCTACTTTAAATTTGTCTTTATTTTTACGGAGTAATATTCAGACTATTTAAATACTGTCTAAGTTCATTCATAAAAAAAACGCAACAACACCCATGCGTATGTACAGGTATCTTACTAGTTTTCCCTTAAAAACAAGATGCATTAGCATTTTATAGACGAATTAAATAACAGAATGGCTTAAATGAAAATGTGTATTTTTACCAGAATTTATCTAGAAAAAAAATTGCAAGGAATAAAACTATTTAAACTTATGAAAAATTAAAAGAAAGCCTAGGGCTTTTCTTTTGGGATCGAAGGTCGTCATCACCGGTCATCGATACATCAAACTATAAGCTACTTCGGAGACTTAGAATATGTTTGGATAGATGGTTTAGGAGGGGAGAGGAGGCTATAAAATTTTTCTAAATAAAAATGAAGTGCGATTAAGAATGTTTTATCATTATCTATCATATTATTCTTTCAACTTTTTAAAATCTCAAATAGATATTAAAATATAGACCAAGCTCTCGAAACCCCCTAAACCCTCGCAAATCCCCACTCCGCACATATCCTTGAGTTCAGAGCCAGAAAGGTGTTTTTTTTCCTTTCCTTTTCTCGCGCGCGTGATGATGCTTCATCTTCCATCAACCTCAGAAGCGTAAAAAAGTTAGGGTTCCACACTGTTATAGGTTAGTTAACGAGTTCAAGCATTGTTGGCAAAATCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00515.31	TPR_1	200	230	1.60E-47
PF13424.9	TPR_12	168	229	1.40E-35
PF14559.9	TPR_19	175	236	2.60E-33
PF14559.9	TPR_19	354	412	2.60E-33

Gene family

Gene family	Subfamily
Epigenetic Regulators	PAFC1

Gene Ontology

GO term	Description	Category
GO:0016593	Cdc73/Paf1 complex	Cellular Component
GO:0000993	RNA polymerase II complex binding	Molecular Function
GO:0006368	transcription elongation by RNA polymerase II	Biological Process
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR019734	Tetratricopeptide repeat
IPR031101	RNA polymerase-associated protein Ctr9

trEMBL

trEMBL term	Description
A0A8B8K636	_

SwissProt

SwissProt term	Description
VIP6_ARATH	Protein CTR9 homolog

KEGG

KO	Description	Enzyme
K15176	RNA polymerase-associated protein CTR9

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G06210	binding
Medicago sativa L.	MsG0280008384.01.T01	_
Oryza sativa L.	LOC_Os07g29360.1	tetratricopeptide repeat domain containing protein, expressed
Cucumis sativus L.	Csa012979	_
Glycyrrhiza uralensis Fisch.	Glyur000459s00027583.1	_
Codonopsis lanceolata	Cl_chr06_07830T	_
Arachis hypogaea L.	AH03G24060.1	Protein CTR9 homolog like

Expression pattern