Gene detail

Detail information of Am06G014680.1 Annotation

Gene ID	Annotation
Am06G014680.1	eukaryotic translation initiation factor 4A1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G014680.1	mRNA	Chr06	52432660	52444264	-

Sequences

CDS:

>Am06G014680.1
ATGAGAGAAGAGAAGGAGAAGAGGGAGCCGCGCAAACCACCACCCTCCACCGCCGTCATCGTCGCCGCCAGCCACAGCACCGCTTCGGCCAGGCCCCCTCCGCCACCGGACTCGGTTTTGCTCATGGCAGGAGCTGCACCAGAGGGTTCTCAATTTGATGCTCGTCAATTTGATACCAAGATGAATGAGTTGCTCACATCTGAGGGGCAGGAATTTTTCACATCTTATGATGAAGTTTATGATAGTTTTGATGCCATGGGCTTGCAAGAGAATCTCCTTAGAGGCATTTATGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGGCTTGATGTTATACAACAGGCTCAGTCCGGAACCGGAAAGACTGCAACTTTCTGCTCTGGAATTCTGCAGCAACTTGACTATAACTTGACAGAATGTCAAGCTTTGGTCTTAGCACCAACTCGTGAGCTTGCCCAGCAGATTGAGAAGGTTATGCGAGCCCTTGGAGATTATCTAGGTGTGAAGGTGCATGCCTGCGTCGGAGGTACCAGTGTTCGTGAAGACCAACGCATCCTATCAAGCGGTGTTCATGTTGTTGTTGGCACTCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCACTTCGGCCAGATAGCATCAGGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGCGGTTTTAAAGACCAGATCTATGATATATTCCAGCTGTTGCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCGACAATGCCTCCTGAGGCACTTGAAATCACTAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTCATGTCAATGTTGAGAGAGAGGAGTGGAAGCTTGACACACTATGTGATCTTTATGAGACATTGGCAATCACTCAAAGTGTCATTTTTGTGAACACTAGAAGAAAGGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACAGTCTCAGCAACCCATGGAGACATGGACCAGAATACTAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCTCGTGTTTTAATAACAACTGATCTTTTGGCTCGTGGTATTGATGTGCAGCAAGTGTCTTTAGTTATAAATTATGATCTCCCTACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGTAGGAAAGGTGTTGCCATCAACTTTGTCACAAAGGATGATGAGAGAATGCTGTTTGACATTCAGAAGTTCTACAATGTGTTAATTGAGGAGCTGCCTTCAAATGTTGCTGAACTACTGTGA

Protein:

Promoter(3k):

>AM06G014680.1
ACTTGTTACATTTCTGATTCTTCCTGATGTAGCCCTAATAAGCGACTACGGATCATATTTTAACTTGAACTTAGCACAACCCGAGATATAATGCTAGACAATCTTGATTGCCCAATATCTACGGAAACCCCAATCCGAAATTCTATTCGAATAATGCTAGGGTCCTAGCTTTGGATTCATGACTCCCCTCCACTAGGTATTAATAACTGGAGGATCGTCATCCTCGATATACACAAGGTATACCATCTACCTTTCCCCGAGGGAAAGTAACTTGATTTGTGTTTACATGAATTGAGAGTTTTTTTGTCTTCATAGACTTACAATCAATTAGCTTACATGACTTGATGAACTTGAAGTTCGTTATCTTAACATGATTGGACTCAAGGTCCGTTAACATTTCTTGATTTGTGTTCTCACGCGTTCTCTAAGTACGGTTTTCGTCACATTCATAGCACCCAAGTTTTCAATCAAACATGAATAACTCCATGATAGCAATCTTTACATTGTTGGGGGACCTTGGGGAATGGATTAGAAGAGGATTGGAATCATTCGGAATGGATAAAAAGGTACTTTGAATTTGAAGATCAGAAGGTCTCACACGACCCGTGCGTGTAGGCGCACGACCCGTGTGTTGTTGAACAAAGTTGTAGAAATTTCCAGAAACTTACGCACGACCCGTGCGACTGAGCGCACGATCCGTGCGTGTTTAAAATCCAGTTCTTGTAGTATCAGATGGAGGCGCACGACCCGTGCTCAGAGGCACACGATCCGTGCGTTTCCATCAGTTTTCCAGAAAACATACTTTTCATGAGTTAAACAATTCCATTCTGATTCCCATTTCCCTTCCGACCGAGACCCAAACATGAACACGTACATTATAGTAGCATAATACAGCAGACATATACTATTCAATTCAGCACATTTCAACGATCAAAACATAGCTTGTTATTAAAAGTCACTGTTTTTAGAAAAGCGGTTTTCGAAAAGATGGAGACTCCGAAAATACACACATTCCCTAAGCGAGTTATAGAACTCACCCGAAGTGATGAAAATCACGCAAACACCGAGACTCCGAGAACTCAACCGCTCTAAAAACCACGAACTCTCCTCGAATTCGCTCCAACAACGAACTCAGCTACTCCAAATCGCTTGGACAGCAGCTGATTCCGAATCCTAGCTACCCAACAACTTCAAACAGCAATTTGTGGCTTGGAGGTGAGCCTTGATACTAAATAATGGACTCTAGCAAGGACATGCAAGGGTTATATCTCCATTTCCATGCTTGGAGCTTGAAGGTTTGAAAATGGTGTTTTGGAGAGAAGTTGGATGTTTGTTCAGAAAATTAGATCAATGGGAAGAAGAAGAAAAATGATGGAGGATGGTAGTTTTAGATTACACATGCATGAACAATATAGGTAGGATCTCTTCCCTTCCTTCTCCACTCTCTCTCTCGAGCTCTCTCCCTCTCTCCCAAGCTCCCTCTCTTCTATTCTTTCTTTTGCTGAAACTAAAAAAATGAAGTGGTGTTATGGTGTGTTCAGCTGGCTTTCAATAAAAGGGGGTTGCAAGGACCAAAATACCCCTACTCTCTAATATTCTCTTAATTTACTCTTAACACCACACTAATCCCCTGACTCACTAACTTAACATAATATTTCAATTATGCACAACTATAATTTATTCATTCCAAACATCACATAATTAATGCAAACTAATCAACTTAACCTCTTGCTAATTTAATTAATCTAATTAGCTAATTAGGGGATGTTACACCGATACTTCAGGGCATCGATCCTTTAGACCCGCAGTGGTCCTTCAGAGCCCCAGTGCTCCTTCAGACCCCCAACGGTCCTTCAGAGCCCCAGTGCTCCTTCAGAGCCCCAGTGCTCCTTCAGAGCCCCAGTTTCTTTATTCCTTTCTCGTCGGCGCCCCGAGTGTTAACCGTTCTCTGTTAATTCTCAAACTCTACACTTTTCTACTGAAAGGACAAAATTAGCATTTGTCTTATCTTTATTTCTATTCCTACTATGAAAACCCTTCAGTTTATCTACGGAATATAAATAAAGAGGGGCAGCTGTCATACCCTAATTTTGTCCGGCTAATTTAAAGTTTATTAGAAAAAATCAAAATTTTGCTCGTTGTGCTTTTTGAGATTTTTGTCGTTTACGCGTGCCGTTTGGTAGCGGCTTGACGTCATTTCTGTTGTTATTAGTAGAACTTATTTTCTTTTTATCGTTTGCAAGAAGAACTTAATTAAAAAAGGCTGTTATTAATATTTGATGTTAACTTTTTTTTTTTACATTACAATATAAAGATAGAAAAATTAGAAATCAGAATTGCTAAAAATTATAGATAATACAATGGAGAGTGATGTGTAAGTCCATTTTGAGACAAGAGTTTTAAACTCTTTTATCATGTTACTGCCCTCTTTCACTAACTAAGGAATGCCTCTTTGCACTACACCAAAGCCTCCATACACAGCCTGTACACAAAGAAACAAATGTGAGCAACAGTCAAACCCAACAAAATCGTGAATGAGGCAGGGGCTCGGGAGAAAGAAAATTGTGATCAGAATACTTTATACATCAAAACATGAAATACTTGAACAAATACACAAAACTGAGAGGCAGAAAAATTGACAACACAGTACAACAAGCAAGGCAAATCCTTCTATATATCCAACTTCAAAAACAAAAATAGGAGGGACAGAACAAAGAAATGAAAAGAAAACAAAGGAAAAAAGAAAAACCAAAACAGTAACATAAGAGAGAAAGAGAAGAGGGAAAGTACCACTCCCAACAACCAACCACCACCTCACCGTGACAACCCTCCACCCCCAGCGCACCATATCACTGCCGTTCCACCACCATCGAACAGCCCCCACTGTCAAACCCGAATCACCACTACGTCGCCGTCCTCTCCCTTTCCCCAACAACCAACAACCACCCCCATTCACAACAACACACACTGAACCATGAGATTTCAAAAGAGAAACAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	106	267	3.70E-41
PF00271.34	Helicase_C	307	415	4.70E-31
PF04851.18	ResIII	124	264	1.10E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003743	translation initiation factor activity	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0002181	cytoplasmic translation	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site

trEMBL

trEMBL term	Description
I1L1K7	_

SwissProt

SwissProt term	Description
IF415_TOBAC	Eukaryotic initiation factor 4A-15

KEGG

KO	Description	Enzyme
K03257	translation initiation factor 4A

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G13920	eukaryotic translation initiation factor 4A1
Medicago sativa L.	MsG0280008327.01.T02	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa016568	_
Glycyrrhiza uralensis Fisch.	Glyur000528s00024904.1	_
Codonopsis lanceolata	Cl_chr06_06910T	_
Arachis hypogaea L.	AH11G36310.1	Eukaryotic initiation factor 4A-15 like

Expression pattern