| Gene ID | Annotation |
|---|---|
| Am06G013830.1 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G013830.1 | mRNA | Chr06 | 46223230 | 46226198 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 178 | 226 | 4.20E-55 |
| PF13041.9 | PPR_2 | 281 | 328 | 4.20E-55 |
| PF13041.9 | PPR_2 | 381 | 431 | 4.20E-55 |
| PF01535.23 | PPR | 181 | 209 | 5.30E-55 |
| PF01535.23 | PPR | 283 | 312 | 5.30E-55 |
| PF01535.23 | PPR | 385 | 413 | 5.30E-55 |
| PF12854.10 | PPR_1 | 280 | 309 | 4.90E-42 |
| PF13812.9 | PPR_3 | 281 | 328 | 1.40E-26 |
| PF20431.1 | E_motif | 503 | 563 | 4.80E-21 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0009451 | RNA modification | Biological Process |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| trEMBL term | Description |
|---|---|
| A0A1S2XH48 | _ |
| SwissProt term | Description |
|---|---|
| PP184_ARATH | Pentatricopeptide repeat-containing protein At2g34400 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G34400 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| Medicago sativa L. | MsG0280008248.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g24150.1 | tetratricopeptide-like helical, putative, expressed |
| Cucumis sativus L. | Csa018479 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001784s00038159.1 | _ |
| Codonopsis lanceolata | Cl_chr04_56530T | _ |
| Arachis hypogaea L. | AH04G12760.1 | Pentatricopeptide repeat-containing protein At2g34400 like |