| Gene ID | Annotation |
|---|---|
| Am06G013600.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G013600.1 | mRNA | Chr06 | 44984334 | 44987707 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 296 | 342 | 1.10E-131 |
| PF13041.9 | PPR_2 | 330 | 378 | 1.10E-131 |
| PF13041.9 | PPR_2 | 367 | 410 | 1.10E-131 |
| PF13041.9 | PPR_2 | 401 | 442 | 1.10E-131 |
| PF13041.9 | PPR_2 | 436 | 484 | 1.10E-131 |
| PF13041.9 | PPR_2 | 471 | 515 | 1.10E-131 |
| PF13041.9 | PPR_2 | 506 | 553 | 1.10E-131 |
| PF13041.9 | PPR_2 | 541 | 588 | 1.10E-131 |
| PF13041.9 | PPR_2 | 611 | 659 | 1.10E-131 |
| PF13041.9 | PPR_2 | 717 | 764 | 1.10E-131 |
| PF13041.9 | PPR_2 | 751 | 799 | 1.10E-131 |
| PF13041.9 | PPR_2 | 786 | 821 | 1.10E-131 |
| PF13041.9 | PPR_2 | 821 | 870 | 1.10E-131 |
| PF01535.23 | PPR | 404 | 434 | 2.40E-104 |
| PF01535.23 | PPR | 474 | 504 | 2.40E-104 |
| PF01535.23 | PPR | 615 | 644 | 2.40E-104 |
| PF01535.23 | PPR | 754 | 783 | 2.40E-104 |
| PF01535.23 | PPR | 789 | 819 | 2.40E-104 |
| PF13812.9 | PPR_3 | 295 | 345 | 4.40E-103 |
| PF13812.9 | PPR_3 | 355 | 415 | 4.40E-103 |
| PF13812.9 | PPR_3 | 460 | 520 | 4.40E-103 |
| PF13812.9 | PPR_3 | 530 | 589 | 4.40E-103 |
| PF13812.9 | PPR_3 | 602 | 659 | 4.40E-103 |
| PF13812.9 | PPR_3 | 706 | 763 | 4.40E-103 |
| PF13812.9 | PPR_3 | 741 | 797 | 4.40E-103 |
| PF13812.9 | PPR_3 | 776 | 835 | 4.40E-103 |
| PF13812.9 | PPR_3 | 811 | 868 | 4.40E-103 |
| PF12854.10 | PPR_1 | 467 | 500 | 7.70E-94 |
| PF12854.10 | PPR_1 | 748 | 777 | 7.70E-94 |
| PF12854.10 | PPR_1 | 783 | 815 | 7.70E-94 |
| PF12854.10 | PPR_1 | 853 | 883 | 7.70E-94 |
| PF17177.7 | PPR_long | 353 | 499 | 3.60E-49 |
| PF17177.7 | PPR_long | 456 | 582 | 3.60E-49 |
| PF17177.7 | PPR_long | 597 | 682 | 3.60E-49 |
| PF17177.7 | PPR_long | 734 | 835 | 3.60E-49 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0009570 | chloroplast stroma | Cellular Component |
| GO:0042134 | rRNA primary transcript binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0045727 | positive regulation of translation | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| A0A1S2XE66 | _ |
| SwissProt term | Description |
|---|---|
| PP163_ARATH | Pentatricopeptide repeat-containing protein At2g18940, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K17710 | pentatricopeptide repeat domain-containing protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G18940 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0280008223.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g40120.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa018500 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000059s00006336.1 | _ |
| Codonopsis lanceolata | Cl_chr04_09660T | _ |
| Arachis hypogaea L. | AH14G14820.2 | Pentatricopeptide repeat-containing protein At2g18940, chloroplastic like |