Gene detail

Detail information of Am06G013170.1 Annotation

Gene ID	Annotation
Am06G013170.1	phosphorylcholine cytidylyltransferase

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G013170.1	mRNA	Chr06	41663569	41668377	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM06G013170.1
AAATATCTAATTAATATTCCACTATAATTGAATAAGTAAGTGGCAATTATGTTCTTTAATTGAAATTAAAGTTTTTTTATGTCTAAATTATGAATAAATATTTTAATACATAAAAATATTGAGAAAAATTGTGGAGCTTCCTTTGGGGTCTCCTTTACATATATATTAAAATAAAAATATCATTTTCATATAGATATAAATATCTAATTAATATTCCACTATCATTGAATAAGTTAGTGGTAATTATGTTATTTAATTGAAATTAAAGTTTTTTTATGTCTAAATTATGAATAAATATTTTAATACATAAAAATATTGAGAAAAATTGTGGAGCTTCCTTTGGGGTCTCCTTTACTTATATAATATATATATATATATATATATATATATATATATATATATATATAATATAATAATCAACTAAAATAATCAATTGAAACTACGAGATAACTCCACTGATATATAAAAAAAACACGGGATAACTGCACTGATATATAAAAAAACACGAGATTAATATTTGTCATTGATAATTAAATTTTTTTGAAGACTGGTACTACACACCTACTATCTAAAAAACAGGAAGTCATAACGACTATTTAAAAGAAATATTTCTTATTGATAATCTATTATCTAACTTTTATTATCTACTATAATCTACTAATCAACTAAAATAATCAACTGAAACTACGAGATAACTGCACTGATATATAAAAAAACACGGGATAACTGCAGTGATATATAAAAAAACACGAGATTAATATTTGACATTGATAATTATAATTTTTGAAGACTACTATAAACCTACTATCCAAAAAAACAAAAAGTCTTAATGACTATATAAACTGATTAATATTTAAAACACACGGGACAATACAAATATTTGTCACTAATACCTAAGAAAAAACAAATAATTGTCACTGATATATAAAAAACACGAGATAAATATTTCTTATTGATAATCTACTATCTATCTTTTACTATCTACTATAATCTACTAATCAACTCAAATAAACAATTAAAACTATGAGATAACTGCACTGATTTATAAAAAAATACGAGATAACTACATTGATATATAAAAAATTACGGGGATAACTGCAATGATATATATAAAAACACGGAATAGCTGCACTGATATATAAAAAAAACATGGGATAGCTGCACTTATATATAAAACAACACGAGATAACAATACTGATATATAAAAAAACACTGCACTGATATATAAAAAAACACGAGATAAATGCACTGATTATTTTTAAACGATACTTTTACAATTTTATATTTTAATATTTATCTATTTTTTATTTGAAACTCATTTTTTATCTACTTTAAATTTGTCTTTATTTTCATGAGGTAATGTTCAGACTATTTAAATACTGTCTAAGTTCATTCATAAAAACAACACGATAGCACCCGTGCGTATGGACGAGTATCCTCTTAGTACCAAACGAAACTCATCCTTAAAGGAAATTAGAGGATGCTTTACTGTCATGGATATGCTTTACTCTCATCCAAACGAAATTTCTTTTTTATTATGTTTTCATGGATATGCTTTACTGTTGTGTAGGAATAGGAGTGATGTGCATTTTCCCTGGTTGATTTTTACCTTGAGACATTAAAGATGGAAGAAGAGAGTGAGAGTAAGAACAGATCCGATCTGGGTTTTGAGAGAGAGAGGGTTTTGTAATTCTAGGTTTTTTATTTTATTTTTTACTTTGTATTTTCTTTTCCGGCATGGATACTTAGGTGGAAATAAAAAAATGACATAGAAACAAATCTATGTGCCAGCATATAAAAAAAAACCACATAACCAATGCCACGTCAGTGCAATTAGTGGATTTTAACGGCAGAGACTGAAAGTGCTAATGGTAAATAATGTTGAGACCAAAAGTGGCAAAAAAAATTTAGAGGGACTAAAAACAAAATTCGCTATATTTATAAGGACTAAAAACATATTTAACTCTACAAATAAATAAGGTTTTTTTTTTAGTTTTAATTTTGTTAGTTGGATTTACGATTTTTTTCTGGATTAGAACACTAATTATCTCCCCCAATTATATATATTATTTTTTTTTTGAGATTAATTATATATATTATTTTGCCCCCACCTAACTTTGGTGACTTAGCTTTTCTAAAAACAAAATGATGAAAAAGAAAAAAGAGATATGATAAGAGAAAAAATATTTGTTTAGAGAGAAAGAGACAACGTCTGTTTCACCCTAAAATAACTGAATTCATCCCTAAGAAATTAATATTAATTGGAATATTTTTTTTTTAAAAATAAAATTAGAAGTACTAAACAAAATTAACATTTTGAACACCATTTTTTCTTTTCATTCATATAAAAAAATCAGGTATTTCATTATACATTTATTTTATCATTTATTTGTTAGCTTAGTAGTAGTTAATAAAAGAAGATAAAGAACACTAAAATTAATAATAATAGAAAATTTTCCAAATAAGTATAATTTTTATGGGCACGGGTACCTCAAAATCCGGCCCCACTCCCTTTATTTACGATTAATCTAATTATCCGTTTATTCAACCTGCATGTACCCGTTAAACTACTCGCACCGTACCTGTAGCGGGTTATATTGAAAAAATAAGGCGCACTCAATGTCCTATTGAAAAATAAAATACTTTTTAGTTAAATAAAAAAGAAAGAAAGCAGTATTACCAAAAAAAAGAATAAAAAAGAAAGAAAGCATAGTGTGATTATTGTATTTAATAAGTGATTAGTGTTTGACTGGACTAATAATGACGGTAGTGAATCTACCCCAAAAGTAATCTAATTTTCTAGTTCATTTATTTCCTTTTACTTTCCCTTTCCATACCCTAATTACTTACCAGATTGACAGCAACATGAAACGGTAAAATAAAAAAAATAAATCAAAAGGCCCCCCCACATAGCAAAAGAGGTGGCAAAAAAACAAAACGGAATAATGTTGCTGGTTTTTGACTCTGCAGAAAGCAAGCATTCTTGTTCACAGTAGAGTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01467.29	CTP_transf_like	19	148	1.60E-33

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005840	ribosome	Cellular Component
GO:0031210	phosphatidylcholine binding	Molecular Function
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0003723	RNA binding	Molecular Function
GO:0006412	translation	Biological Process

InterPro

InterPro term	Description
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
IPR004821	Cytidyltransferase-like domain
IPR041723	CTP:phosphocholine cytidylyltransferase domain
IPR045049	Choline-phosphate cytidylyltransferase Pcy1-like

trEMBL

trEMBL term	Description
G7INF3	_

SwissProt

SwissProt term	Description
CCT1_ARATH	Choline-phosphate cytidylyltransferase 1

KEGG

KO	Description	Enzyme
K00968	choline-phosphate cytidylyltransferase	[EC: 2.7.7.15]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G32260	phosphorylcholine cytidylyltransferase
Medicago sativa L.	MsG0380016021.01.T01	_
Oryza sativa L.	LOC_Os02g07720.2	cytidylyltransferase domain containing protein, expressed
Cucumis sativus L.	Csa015574	_
Glycyrrhiza uralensis Fisch.	Glyur000755s00017976.1	_
Codonopsis lanceolata	Cl_chr01_58630T	_
Arachis hypogaea L.	AH04G11360.1	Choline-phosphate cytidylyltransferase 1 like

Expression pattern