| Gene ID | Annotation |
|---|---|
| Am06G013030.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G013030.1 | mRNA | Chr06 | 41059805 | 41062465 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF01535.23 | PPR | 355 | 380 | 1.50E-73 |
| PF01535.23 | PPR | 456 | 483 | 1.50E-73 |
| PF01535.23 | PPR | 575 | 604 | 1.50E-73 |
| PF13041.9 | PPR_2 | 149 | 195 | 1.80E-65 |
| PF13041.9 | PPR_2 | 354 | 400 | 1.80E-65 |
| PF13041.9 | PPR_2 | 453 | 484 | 1.80E-65 |
| PF14432.9 | DYW_deaminase | 794 | 886 | 5.70E-46 |
| PF20431.1 | E_motif | 696 | 758 | 9.70E-22 |
| PF20430.1 | Eplus_motif | 763 | 790 | 1.60E-08 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0003723 | RNA binding | Molecular Function |
| GO:0031425 | chloroplast RNA processing | Biological Process |
| GO:0005737 | cytoplasm | Cellular Component |
| GO:0016020 | membrane | Cellular Component |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0A1S2XGC0 | _ |
| SwissProt term | Description |
|---|---|
| PP285_ARATH | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G57430 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0280008092.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g02850.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa008650 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur006352s00044643.1 | _ |
| Codonopsis lanceolata | Cl_chr02_43520T | _ |
| Arachis hypogaea L. | AH08G24040.1 | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic like |