| Gene ID | Annotation |
|---|---|
| Am06G012710.1 | Pentatricopeptide repeat (PPR) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G012710.1 | mRNA | Chr06 | 39050289 | 39056493 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 176 | 225 | 2.60E-165 |
| PF13041.9 | PPR_2 | 211 | 259 | 2.60E-165 |
| PF13041.9 | PPR_2 | 246 | 294 | 2.60E-165 |
| PF13041.9 | PPR_2 | 284 | 330 | 2.60E-165 |
| PF13041.9 | PPR_2 | 316 | 353 | 2.60E-165 |
| PF13041.9 | PPR_2 | 351 | 400 | 2.60E-165 |
| PF13041.9 | PPR_2 | 386 | 434 | 2.60E-165 |
| PF13041.9 | PPR_2 | 456 | 505 | 2.60E-165 |
| PF13041.9 | PPR_2 | 491 | 537 | 2.60E-165 |
| PF13041.9 | PPR_2 | 526 | 572 | 2.60E-165 |
| PF13041.9 | PPR_2 | 561 | 610 | 2.60E-165 |
| PF13041.9 | PPR_2 | 596 | 644 | 2.60E-165 |
| PF13041.9 | PPR_2 | 639 | 680 | 2.60E-165 |
| PF12854.10 | PPR_1 | 208 | 239 | 8.10E-131 |
| PF12854.10 | PPR_1 | 243 | 274 | 8.10E-131 |
| PF12854.10 | PPR_1 | 278 | 309 | 8.10E-131 |
| PF12854.10 | PPR_1 | 312 | 345 | 8.10E-131 |
| PF12854.10 | PPR_1 | 350 | 378 | 8.10E-131 |
| PF12854.10 | PPR_1 | 383 | 414 | 8.10E-131 |
| PF12854.10 | PPR_1 | 418 | 449 | 8.10E-131 |
| PF12854.10 | PPR_1 | 487 | 519 | 8.10E-131 |
| PF12854.10 | PPR_1 | 592 | 625 | 8.10E-131 |
| PF01535.23 | PPR | 214 | 244 | 7.60E-111 |
| PF01535.23 | PPR | 249 | 279 | 7.60E-111 |
| PF01535.23 | PPR | 284 | 313 | 7.60E-111 |
| PF01535.23 | PPR | 354 | 382 | 7.60E-111 |
| PF01535.23 | PPR | 389 | 418 | 7.60E-111 |
| PF01535.23 | PPR | 424 | 454 | 7.60E-111 |
| PF01535.23 | PPR | 494 | 524 | 7.60E-111 |
| PF01535.23 | PPR | 564 | 594 | 7.60E-111 |
| PF01535.23 | PPR | 599 | 629 | 7.60E-111 |
| PF13812.9 | PPR_3 | 204 | 256 | 1.00E-74 |
| PF13812.9 | PPR_3 | 270 | 325 | 1.00E-74 |
| PF13812.9 | PPR_3 | 340 | 396 | 1.00E-74 |
| PF13812.9 | PPR_3 | 482 | 537 | 1.00E-74 |
| PF13812.9 | PPR_3 | 515 | 572 | 1.00E-74 |
| PF13812.9 | PPR_3 | 550 | 606 | 1.00E-74 |
| PF13812.9 | PPR_3 | 619 | 677 | 1.00E-74 |
| PF17177.7 | PPR_long | 238 | 317 | 3.30E-36 |
| PF17177.7 | PPR_long | 442 | 556 | 3.30E-36 |
| PF17177.7 | PPR_long | 585 | 677 | 3.30E-36 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT1 |
| GO term | Description | Category |
|---|---|---|
| GO:0009507 | chloroplast | Cellular Component |
| GO:0031930 | mitochondria-nucleus signaling pathway | Biological Process |
| GO:0004519 | endonuclease activity | Molecular Function |
| GO:0140053 | mitochondrial gene expression | Biological Process |
| GO:0005739 | mitochondrion | Cellular Component |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| A0A1S3E5A4 | _ |
| SwissProt term | Description |
|---|---|
| PPR56_ARATH | Pentatricopeptide repeat-containing protein At1g22960, mitochondrial |
| KO | Description | Enzyme |
|---|---|---|
| K17710 | pentatricopeptide repeat domain-containing protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G22960 | Pentatricopeptide repeat (PPR) superfamily protein |
| Medicago sativa L. | MsG0580029650.01.T01 | _ |
| Oryza sativa L. | LOC_Os12g05640.1 | pentatricopeptide containing protein, putative, expressed |
| Cucumis sativus L. | Csa003172 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000112s00012303.1 | _ |
| Codonopsis lanceolata | Cl_chr02_09590T | _ |
| Arachis hypogaea L. | AH06G20190.1 | Pentatricopeptide repeat-containing protein At1g22960, mitochondrial like |