Detail information of Am06G011370.1 Annotation
Gene IDAnnotation
Am06G011370.1 RNA polymerases M/15 Kd subunit
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am06G011370.1mRNAChr063341253033414891-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF02150.19RNA_POL_M_15KD4392.30E-12
PF01096.21TFIIS_C751134.70E-12
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0006283transcription-coupled nucleotide-excision repairBiological Process
GO:0006367transcription initiation at RNA polymerase II promoterBiological Process
GO:0008270zinc ion bindingMolecular Function
GO:0005730nucleolusCellular Component
GO:0003676nucleic acid bindingMolecular Function

InterPro
InterPro termDescription
IPR001222Zinc finger, TFIIS-type
IPR034012Pol II subunit B9, C-terminal zinc ribbon
IPR001529DNA-directed RNA polymerase, M/15kDa subunit
IPR012164DNA-directed RNA polymerase subunit/transcription factor S
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved site

trEMBL
trEMBL termDescription
A0AAN9TGA5 _

SwissProt
SwissProt termDescription
RPB9A_ARATHDNA-directed RNA polymerases II, IV and V subunit 9A

KEGG
KODescriptionEnzyme
K03017DNA-directed RNA polymerase II subunit RPB9

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT3G16980 RNA polymerases M/15 Kd subunit
Medicago sativa L. _ _
Oryza sativa L.LOC_Os12g37370.1DNA-directed RNA polymerase II subunit RPB9, putative, expressed
Cucumis sativus L.Csa009064 _
Glycyrrhiza uralensis Fisch.Glyur000161s00011264.1 _
Codonopsis lanceolataCl_chr01_53230T _
Arachis hypogaea L.AH14G10910.1DNA-directed RNA polymerases II, IV and V subunit 9A like

Expression pattern