| Gene ID | Annotation |
|---|---|
| Am06G011000.1 | phytochrome B |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G011000.1 | mRNA | Chr06 | 31969784 | 31976393 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00360.23 | PHY | 444 | 619 | 1.90E-55 |
| PF00989.28 | PAS | 649 | 764 | 7.10E-48 |
| PF00989.28 | PAS | 780 | 899 | 7.10E-48 |
| PF08446.14 | PAS_2 | 98 | 217 | 4.40E-43 |
| PF01590.29 | GAF | 251 | 431 | 3.90E-33 |
| PF02518.29 | HATPase_c | 1033 | 1139 | 3.80E-12 |
| PF08448.13 | PAS_4 | 657 | 767 | 5.70E-11 |
| PF00512.28 | HisKA | 925 | 985 | 7.00E-10 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0000155 | phosphorelay sensor kinase activity | Molecular Function |
| GO:0009584 | detection of visible light | Biological Process |
| GO:0000160 | phosphorelay signal transduction system | Biological Process |
| GO:0006355 | regulation of DNA-templated transcription | Biological Process |
| GO:0017009 | protein-phycocyanobilin linkage | Biological Process |
| InterPro term | Description |
|---|---|
| IPR036097 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily |
| IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| IPR043150 | Phytochrome, PHY domain superfamily |
| IPR013515 | Phytochrome, central region |
| IPR013516 | Phytochrome chromophore binding site |
| IPR016132 | Phytochrome chromophore attachment domain |
| IPR044767 | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain |
| IPR012129 | Phytochrome A/B/C/D/E |
| IPR001294 | Phytochrome |
| IPR013654 | PAS fold-2 |
| IPR013767 | PAS fold |
| IPR035965 | PAS domain superfamily |
| IPR000014 | PAS domain |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR003594 | Histidine kinase/HSP90-like ATPase |
| IPR005467 | Histidine kinase domain |
| IPR029016 | GAF-like domain superfamily |
| IPR003018 | GAF domain |
| trEMBL term | Description |
|---|---|
| C7FHN7 | _ |
| SwissProt term | Description |
|---|---|
| PHYB2_SOYBN | Phytochrome B-2 |
| KO | Description | Enzyme |
|---|---|---|
| K12121 | phytochrome B |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G18790 | phytochrome B |
| Medicago sativa L. | MsG0280007850.01.T01 | _ |
| Oryza sativa L. | LOC_Os03g19590.1 | phytochrome B, putative, expressed |
| Cucumis sativus L. | Csa017326 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000005s00001001.1 | _ |
| Codonopsis lanceolata | Cl_chr01_52730T | _ |
| Arachis hypogaea L. | AH04G08120.1 | Phytochrome B like |