Gene detail

Detail information of Am06G010790.1 Annotation

Gene ID	Annotation
Am06G010790.1	Translation elongation factor EF1B/ribosomal protein S6 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G010790.1	mRNA	Chr06	31049247	31052398	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM06G010790.1
ACGTGGCAGCTGACTCAGCTTGCACACATCATTTAATGATGCCACGTGGACCAGCCACGTCAGATATTATATTAAATTTAAGTAAAAAAAAACTGTTAACTATTGTTATTAAAATTAAAATGATTAATAATTAAATAAATGAAATTAAAATGGAAGAAAACAGAAAGCGAGAGGGAAGAAAACAGAAGACGAAGAACAGAAAGCGAGAGGGAAGAACACAGAAGACGAAGAACTCAACGCGAACGAATCTCCAGTGATTCTTCTTCTTCTTCTTCTTCAATAATCGACCTCTTCATCACTTGTTCTTCAAACTAAGAATTTGTTCTTCGCGAAATTTGGTTTGAATCGTAAAACCTAAGCTCACAACCGAAAATCCCAAATCGTTTGAACCCTAAATCTTCTTTCTTCTCTCATTCCTCTTCTTCATCTTCTTGGTCGATTCTTCTCCTCTTCTTTCATGAAAGAAAAAGATTCACGCGATTTCTATATGGGTGCCTCCATTGAAGCTTCTGGTTCGTCTACGAATTCGCGAATTACAGGTTCATCAAGAACGAAACACTTGTGTGACTGTAATGTGGAATCACCCTTGATGACCTGCAAAACTATACCTAACTATGGAAGAAAGTTTTGGGGGTGTGGATTATACAAAGTGTATGGGTTCAAGATGTGTGAGTTTTTCATATGGCTTGATGAGGAGTATACTGACCAAGGATTTACTAAATTGGTTAATCAAGTTCAGGAACTACGCAAAAAGGATCAAGATGCACAAAATGACATCATGCAACTCAAGAGTAAGTTGGATGAATTGAAGAAGAAGAATGAAGTATTGAAGAGGAAAAATGAAGAAAAAAAAGCATCAATTGTGGAATTGAAGAAGAGCTCTACTGAAATGAAGATAAAGAACCAGTTTTTTTCTGGTTTAATGGTCATTGGATGGGTTATTGTAATGTTGGTTGTGGTTGTTTTAATGGGAAAATAAACAGTGAATTAGATTGTGTTTAGTGTGGTTATGTTGTTGTGGTTATGTTGCTGCAGATTGTCTTTAGATTGAAGTTGGTGCATTAGATTGTGTTTAGTGTGGTTATGTTGTTGTGGTTATGTTGCTGCAGATTGTCTTTAGATTGAAGTTGGTGCAAATTTATGAAGTTGCTGCAGATTGTGTTTAGTGTGGTTATGTTGCTGTTGTGGTTATGTTGTAATGTTGCTGCAGATTTATGTAGTTGTAATGTTGCTGCAGATTTATGTAACAGATGTCATATGAATTATATAAGTGAAATGAAGTTGTTTACATTGCAAATTTACATTGTATGAATTATGTAACAGATTTATATATGTTGCTGGAAAAAAAAGTAATGCCATTAACTAAAAAAGTAATGCTGTAATGCTGTAACAGATATAACCTCAAGTAATGCTGTAATGCTGTAACAGATATAACCTAAAGTAATACCATTAACTAAATGTGTTTACATTGTTTATATTGCTGGAAAAAAAAAGTAAAGCATCAACTAAATGTGTCAAACTTTCATTGAAATTGCATAATCAGTAGCCATTACAAGTGGAACAGTTTGTACAAAAGACTGCATAATCAGTAACCAAAAACTGCACAATTCACAAGTGGAACAGTTTGTACAAAATACTGCCTAATCAGTAGCCAAAATACTGCCTAATCAGTAGCCAAAATACTGCCTAATCAGTGGCCAAAATACTGCCTAATCAGTGGCGAAAATACATAATCAGTAGCCAAAATACTAAGCCTAAATATAAACCACTATGACATTCATTCATTGAGTTGGTTGAGTTGCTTGAGGTGCTTCATTGTCTTGAGACAAAACAGTTTGAGGTCCATCATGTGTCAAATCAGTTCCAGTTCCAGTTCCTCTTCCTCTACCATTTCCAGTTCCTCTTCCTCTTCCATTTCCTGGTGATCTTCCTCTTGCTCTAACTGTTCCAGTTCCTCTCCCTCTTGCTGCAGCAGTTCCTCCTCCTCTCCCTCCACTTGTGCTAGCTTCGTGTTGTTCAGTCATTGTCCTCTTAACCCTCTGTCATACGTACACAACAATAATCCAGAATTAGATGACTTAAATTAGAGAATTAATGGTTAACAATAGACTAAATAATTACCTTGTTTCCACCTACTGGGATCACTCTATCTGCTTTTGTCTTCCCTTTGCAGCTCCTTATATTGTGGCCTAAAACCCCACATTTTTGGCACTTCACAGTAGGTAACAATCTTGGGAGTCTATTAGGATCTCTTGGATCATCATTGGACTTGTATCTCAGTTTCTTCGGCCTGCCAGGTGCTCTTCTCATTCTTGGTGGATGAATTGGGTCAGATTCAGTGATTGGCCAGAGCATAGGACCATTTGATGGCATAATCAAGTATGAATAGGTGGCCAAGAAAGTAGACTTTCTATAAAATTGTGCAACATAATTCTCAGGAGGCACATTGTTACACCACATGCAACAAATAGCATGTGGACAAGGGATCCCAGTCATATCCCATTTCCTACATGCACATGTTTCTTCCCTCTCGCTTTCTGTTTTCTTCCATTTTAATTTCATTTATTTAATTATTAATCATTTTAATTTTAATAACAATAGTTAACAGTTTTTTTTTACTTAAATTTAATATAATATCTGACGTGGCTGGTCCACGTGGCATCATTAAATGATGTGTGCAAGCTGAGTCAGCTGCCACGTCATTTAATGAGTGCCACGTCAGCTTTTTTAAAAAAAAAAATAACAAATCAGCCAAAAAAAACTGGAAAGCCCCCTTTGGACTAAATGTTCTGACTTTTTTAAAATTGGGGGACTAAATGTCTGAGTTTTAAAATAGGGGGACCAAATGTCTGAATTTTTGAAAATAGGGGGACCAAAACTATAATTTAGCCTAATTTTTTTTACTGATGGATGGTGTAAAAAGTTTTACACCCACACCACAGTCAAATACCAAATAAATCCAATTATGCAACCAAACACTCGCTTCGGCTATCTCTTACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01250.20	Ribosomal_S6	141	229	3.00E-25

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005840	ribosome	Cellular Component
GO:0006412	translation	Biological Process
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0005737	cytoplasm	Cellular Component
GO:1990904	ribonucleoprotein complex	Cellular Component

InterPro

InterPro term	Description
IPR014717	Translation elongation factor EF1B/ribosomal protein S6
IPR020814	Ribosomal protein S6, plastid/chloroplast
IPR020815	Ribosomal protein S6, conserved site
IPR035980	Ribosomal protein S6 superfamily
IPR000529	Ribosomal protein S6

trEMBL

trEMBL term	Description
I1MGC0	_

SwissProt

SwissProt term	Description
RFAC3_ARATH	Protein REGULATOR OF FATTY ACID COMPITION 3, chloroplastic

KEGG

KO	Description	Enzyme
K02990	small subunit ribosomal protein S6

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G17170	Translation elongation factor EF1B/ribosomal protein S6 family protein
Medicago sativa L.	MsG0080048993.01.T01	_
Oryza sativa L.	LOC_Os12g37610.1	ribosomal protein S6, putative, expressed
Cucumis sativus L.	Csa019127	_
Glycyrrhiza uralensis Fisch.	Glyur000005s00001041.1	_
Codonopsis lanceolata	Cl_chr01_51870T	_
Arachis hypogaea L.	AH04G08430.1	30S ribosomal protein S6 like

Expression pattern