Gene detail

Detail information of Am06G010640.1 Annotation

Gene ID	Annotation
Am06G010640.1	Pectin lyase-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G010640.1	mRNA	Chr06	29849930	29855146	-

Sequences

CDS:

>Am06G010640.1
ATGGCTCACATTCGTGTATCTTTTATCCTATGCATTACAATGATTATTTTCATCCACAATTTGGATAATGTTGAAGGAAGATACCATTATCACAAAAAAGAGAAGAAAAATTCCCCTGTTCCAAATCCTCCTACTAATAATAACCCAGCACCAAGTGACCCTTCACCTCCTTCTAATTCTCCTAGTGTTCCCTCTGATCCATATCCGAATAATCCCGGCGGCGAATCCCCTTCAGAAAACATTTTCGATGTAACATCTTTCGGCGCAGTTGGTGATGGTTCAGCTGATGATACAGCTGCATTTAGAGCAGCTTGGAAAGCAGCTTGTGCTGTAGATTCAGGAGTTGTTTTAGCTCCAGAAAATTACTGTTTTAAAATCACTTCTACCATCTTTTCAGGTCCTTGCAAACCAGGACTAGTATTTCAAATAGATGGTACTCTAATGGCACCAGATGGACCAGATTGTTGGCCAGAGAAAGATAGTCGCAGTCAATGGCTTGTGTTTTATAGACTTGATCAAATGACTCTAAATGGGACAGGAATTATTGAAGGAAATGGTGAACAATGGTGGGATCTCCCTTGTAAACCTCACAGGAGTCCAGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGATTCTTTATGAGCTCGAATTTGGTGCTAAGCGGGTTAAAAATTCAAAACAGTCCTCAGTTCCACGTGAAATTCGACGGTTGCGAAGGAGTACTAATCGATAAGTTGTCAATTTCTGCTCCTAAACTTAGTCCCAACACTGATGGAATCCACTTAGGAAACACGAGGGGTGTTGGCATTTATAATTCCTTGATAAGCAATGGTGATGATTGCATTTCAATTGGACCTGGTTGTTCTGATGTGAATGTAGATGGTGTAACTTGTGCTCCTACCCACGGGATTAGCATTGGAAGCCTAGGAGTACACAACTCACACGCATGTGTATCAAACCTAACAGTCCGAAACTCAATAATAAAAGAATCAGACAATGGTCTTCGAATCAAGACATGGCAAGGAGGTACAGGTTCAGTAACAGGTTTAACATTCGAAAACATAGAAATGGAGAATGTAAGAAACTGCATAAATATAGACCAATACTATTGCATGACAAAGGAATGTCTAAACCAAACATCAGCAGTACATGTTGATAATGTGTCGTACAAAAACATAAAGGGTACTTATGATGTTAGAACACCTCCTATTCACTTTGCTTGTAGTGACACTGTTGCTTGTACCAACATAACACTTTCTGATGTTGAACTTTTGCCTTATGAAGGGGAATTATTAGATAACCCTTTTTGTTGGAATGCTTATGGTAGACAAGACACTATGATTATACCTCCTATTGATTGTTTGAGAGAAGGTGAACCTGAGACTGTTGTTGAGCTATCTGCTTATGAATGTAGCACTTAA

Protein:

Promoter(3k):

>AM06G010640.1
TGAATCATGACTCAGAACTCAAGCCTCACCAATTCGATTTTCAAAATATTGCAAAGAGGTTAATATTTTTTTTGTTTGGACGATTGCTAGCTATCCATGAAGTATCCAAACGCTTTCAACTAAAGACTAATCTCCACTCGTGCTTAGGATCATATTTCACACTAACCAACACCGATTTTGTCTACTGCGAAAATCGAAACCAAAAGCACCGAGTAGACCCCATATCCCAGAGTAGATGATGCCAATGGACCAACTGTGTTTCTTCAAAGATGTTAATTTCTGCTAGCTACAAACACTGCTGTCACTTCAGATCACAAAAAAGTGCTCCTCAGAATCTCACCTGTGATTGTAGACACGTGACAGGTTAAGACAAACATGACTGCATCTTCAAATATTTCCATATCTCTCGCTTGAATTCTTCGCCCTTCTTCTATATAAGTCCCCTCTCATACACATATTTATAAAGCAAGTCATTCTTTTTGCACGATAAATTTTCTTAGACATTATACACATTGTCACAATCTTCACGTTAAGTCCACTGCATTGGATGCTTACAGAAATTTCCTGAGCTCAGGTGAAGTCACCAATTCTAATTGATTTTTCATTGTTCATTAATTTATTTGACTTGTCACACTAGAGAATAGAGATAGCATTTAAGATTGAGCCCAATTGAGAGTGTAATGTGATTTGTAAGTGTGAAGTTATTTTGCCGTCTAAAAAATCTAAATAATTTAGATGTAAGATTTTTAAACTATGACAATGGGCGGCAAAATTCTTCATCAGTATGTAGTAGCACAGGGCCTCAGCTCAATCTTTTTTTTTAAGGCTAAAAAAAATTAGTATATAGTTGATGAAAAAAGTTAGGTTTTTTGTGATTCATTTGATAAAAATATAATTAACGGCTCAATTGTTAAAATTTGAATAGAACCTCTAAATTGTTTGAGACGACCTTAAAGAGTTTAAAGTTGTTGCTTTCTCAGGCTAGATTTAAACTCAGGACCTCTGATTAGAGACCCTAATCATCTCATCCATCCGAGCATTCTAGCATATATTTAATTGGGGAATTTGAGTTTGTATAGTTGGGTCACTTTCTTAGTTGTAACACAGTGTGTGTCTCATAGCTTGGTTTTATTTCACCTTGTATATGCTTTACATTATGCATGATTTGATTCCACCCGTGAATGCGTTAATTTTGTTGTCGGGTATCAATATATAGTCTACCCAACAATAAATTCAGGGCCACAAGCTAAACAACAATATAGAGTCACGATATGGATTACTTTTGCATCAAAACCACATTCATCTATTTTACACTTATTTTATATTGCTATCAAGCTAACCTCGATTTGCTACGGCCAAAAAATGTTGTATACAAACATATGACCTAAAGGGGTGTTTGGTTTAGAAGAGAAAGATGAAAGAGAGAAACAAATGAGACAGAATAAGGAAAGAAAGAAAGAAAGAAAGAAGTGAGAAATAAAGTAGATTAAGGGTGTTGTTTGGTTTAAGGGAAATAGAAGAGAAATAGATGAGAGAGATGTGTCTCTTGATTTAGTTGGAGAAAAAGGGAGAAATGATGCTACTTTTGAAAAGACAAAAACACCCCTAATTAATAAAGAAAGATGATTCTCTATCGTGCATACTTTGATAATGGAAAAGAACAAGTAATATTTTTTAGTATAAACCAATGTAATTTGGTTGCATTAATTCATAGATTATGAGTGTCATATCTAGATGCCTAAAATTAAGTAGATCAATAATGAGGAAACAAAACATTTTAATAAGAGAATTTCATTAGTTGCTTAATCTAGCATGCAAGAGAATGTTTTTTGTTCAGAAAATGCATGGAAGGACATATAAATTTTGTTTAACTCAAACTAGAATGGTCGTTAAGATTTCATTATGTAAGTTCAATTGTTTTTTATGTCTTCCTATAGATAGATTTCTTACGTTTACGATTCCCCATATGATATATATAGCTTTCTTCTTTTTTTTACTATCTGCTAATTTGCCAATCAGAGATTTGGTTCTAACTTGTAGCTAAAATTCACATGCAATTTCAAATATACTATTGTGTTTCTAATAGTTGCATGTGTCGGTTTGCCATTGTCCATTGTAAAATTCATAAATAATTTATGATGTCATATAATATAACCAAACAAAATGAAAAATTCATAAAGGTGTATGGTGTAAAATTTTCTCCCTCATTTTTTTTCTTTATAAAAATAAAGTAGAAGTATGGAATTAATTTATGTACACCGTCGGTGTATAAATGTTTTACACATCAACCAATTACAAATTAATATGTTATTTGAAAGAAGTGAATCAACTAATAACCATATTATAAGTCACTCTTATCATAAATTATTTTTGGTTGTAAGTGTAAAAAAATTTACACCGACAATGCGTAACGATTAAACTCTAAAAGTATACCATGTGAAAATTTTAATACCTGAAATTAGTCAATTCTTCTTAAAAGGACAGATGTTGTCTTTTTAAATAAGCTTTCAATATTTTTTTTAAACTCACCTATATAAGCTTTCGATATATACATATAGTTTTTTTTTTCTAACTATATTTTGAGAAATAGAAATATGGTTGGTTTAAGCACGGTTTTTCTACAAAACCTGAACCTCAGAGGAAGCAATACACAAAATATGAAAATACAAAGGGAGAAAACTAACGGCAAATGTTGTCTAAAGAAGAAAGCAAAGGAATCATTTTAATTGAACAAAATTATTTACTAAAGAAAATTAACCTCCAAAACCACCTTTAAAAACTTCCAACGGTTTCCATGAGCCACAAGAAATCAACACGTGTCCACCTTATGCTTGAGAATTTATTCCTCAGCTATCATCCAAATTCTGAGTATAAATAACAATCTTTGCTTCACAATGCTCCTTACTAAGCCAATTTCTAAAGCTTAACATTTTGTATTTTCCTTCTACAGATATAATCATTGAAGAAGCTTATGCTTTCATTTCACATTGGTAGTATACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00295.20	Glyco_hydro_28	122	429	2.20E-84
PF13229.9	Beta_helix	219	371	9.90E-07

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH28

Gene Ontology

GO term	Description	Category
GO:0004650	polygalacturonase activity	Molecular Function
GO:0005975	carbohydrate metabolic process	Biological Process
GO:0016020	membrane	Cellular Component
GO:0047911	galacturan 1,4-alpha-galacturonidase activity	Molecular Function
GO:0016829	lyase activity	Molecular Function

InterPro

InterPro term	Description
IPR011050	Pectin lyase fold/virulence factor
IPR012334	Pectin lyase fold
IPR006626	Parallel beta-helix repeat
IPR000743	Glycoside hydrolase, family 28

trEMBL

trEMBL term	Description
A0A2K3P7P6	_

SwissProt

SwissProt term	Description
PGLR4_ARATH	Polygalacturonase At1g48100

KEGG

KO	Description	Enzyme
K01184	polygalacturonase	[EC: 3.2.1.15]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G48100	Pectin lyase-like superfamily protein
Medicago sativa L.	MsG0280007806.01.T01	_
Oryza sativa L.	LOC_Os05g20020.1	polygalacturonase, putative, expressed
Cucumis sativus L.	Csa005474	_
Glycyrrhiza uralensis Fisch.	Glyur000373s00018539.1	_
Codonopsis lanceolata	Cl_C02007_unscaffolded_00010T	_
Arachis hypogaea L.	AH14G10010.1	Polygalacturonase At1g48100 like

Expression pattern