Detail information of Am06G010640.1 Annotation
Gene IDAnnotation
Am06G010640.1 Pectin lyase-like superfamily protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am06G010640.1mRNAChr062984993029855146-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF00295.20Glyco_hydro_281224292.20E-84
PF13229.9Beta_helix2193719.90E-07
Gene family
Gene familySubfamily
Carbohydrate-Active enzymes FamilyGH28

Gene Ontology
GO termDescriptionCategory
GO:0004650polygalacturonase activityMolecular Function
GO:0005975carbohydrate metabolic processBiological Process
GO:0016020membraneCellular Component
GO:0047911galacturan 1,4-alpha-galacturonidase activityMolecular Function
GO:0016829lyase activityMolecular Function

InterPro
InterPro termDescription
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold
IPR006626Parallel beta-helix repeat
IPR000743Glycoside hydrolase, family 28

trEMBL
trEMBL termDescription
A0A2K3P7P6 _

SwissProt
SwissProt termDescription
PGLR4_ARATHPolygalacturonase At1g48100

KEGG
KODescriptionEnzyme
K01184polygalacturonase[EC: 3.2.1.15]

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT1G48100 Pectin lyase-like superfamily protein
Medicago sativa L.MsG0280007806.01.T01 _
Oryza sativa L.LOC_Os05g20020.1polygalacturonase, putative, expressed
Cucumis sativus L.Csa005474 _
Glycyrrhiza uralensis Fisch.Glyur000373s00018539.1 _
Codonopsis lanceolataCl_C02007_unscaffolded_00010T _
Arachis hypogaea L.AH14G10010.1Polygalacturonase At1g48100 like

Expression pattern