Gene detail

Detail information of Am06G010140.1 Annotation

Gene ID	Annotation
Am06G010140.1	homeodomain GLABROUS 11

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G010140.1	mRNA	Chr06	27013644	27019842	+

Sequences

CDS:

>Am06G010140.1
ATGGATTATTCATTTGGAGGTAGTGGTTCTGGAGAAGAAGATAGTGACTACTCACAAAAAGAGAGAAGATCATCATACAAACGTCTCACTGTTGCTCAAACCAATGTACTTGAAAAATTCATCAGGGAATGCCCTCGCCCAGATGAGGGTCAAAGAAGGAAATTAGCTGAAGAGGTTGATCTTGATCCCAAACAAATCAAGTTTTGGTTTCAGAACAAGAGGACTCAACTCAAGAATCAACATGACCGAGCTGATAACAACTCTCTTCGCCTTGAGAATGATAGGCTTCTTAATGAAAATGTCCTAATCAAAGAAGCATTGCAGAAAGTACTTTGTGAACCTTGTGGTGGTCCACCTTTTCCTAAGGAAGAGCATGAACTTTTCATGCAAAAAATGCGAACAAAAAATGCTAAGCTCAAAGAAGAGATTGAGAGAGTGTCTAACTATCTTGCAAAGTACTTGGAGAGACAGATAACACAAGCTGAGCTGGAGGAAGCAATTGGTCATATAACAAAATCAGTATCTGATGGAAGTAGTTCAAGTAATGATCATACTCATACTCATAGTAATGGTATTCATGTGGATGGTATGGTCTTAGTAAAGAATCGAATGGAAAAATTATATATGGAAAAGACAATGATGTCCCAGATTGCAGTTGTAGCAATGGAAGAATTAGTTAAGCTTGCTCGCATGAATGAGCCTTTCTGGATTGACTCCACTCTCAATCGTACAAGTTATGATCAAGTTTTTCCAAAGGCTAATCACTTCAATGGTGATAATGCCATTGAAGAATCATCAAAGTATTCTGCAGTTATCAACCTTAGTGGCATGCAGCTTGTTGACATGTTCCTCGATGCGGAGAAATGGACAAAGCTTTTCCCAACATTTGTGACAAAAGCAGAAACAATCAAAGTATATGAAACTGGATTGATGGGAAATAGAGATGGAGCATTGCAGCTGATGTATGAAGAAATTCATGTTATTTCACCTTTAGTGCGACCTCGTGAATTCAACTTCGTTAGGCATTGTAAACAAGTTGAAGTTGGAGTTTGGGTTATAACAGATGTGTCTGTTGATTCCTCTCGACACAACATTATCCCTCTCACTCGCTCTTGGAAACATCCTTCTGGAATCATGATTCGCGAAATGCCTAATGGCGGTTGCACGGTTACTTGGATTGAACATGTGGAAGTTGATGATAAGATTCATACACACATCCTCTTCAAAGATCTTGTTGGTAACACTAACTTATATGGAGCTGAAAGATGGGTCAGGGAACTTCAAAGGATATGTGAGAGATCTGTTAGCTTTTATGTTGAAAAGATACCTGATTATGAACCTAGAGCAGTGATCAAGTCACTTGAAGCGAGAAAGAGTGTGATGAGACTTTCTCATAGAATGGTTAAGATGTTATGTGAAAGGTTAACAATGTCAGATCAGCTGAATTTCCCTATTACTACTGGAGATGGCAATGGTTGGGTTAGAGTCTCTATTCACAAAAGTGGTGGTATGGGAGAACCACATGGGACAATTGTTTGTGTTGTTGCTACTCTTTGGCTTCCTATACTTGCTGAGAATGTTTTTGACTTCCTCACTGATCATACAAAAAGACATAAGTGGGATGTTCTTTCTGGTGAAGATCCTGTGCAGGAGATGGCACACATTCCATGTGGACTTAATCCTGGCAACTTTACCTCAATCATTAAGCCATCAATTGCTTTTCAGAACTATGCAATGATTCTTCAAGAAAGTTTCTCATCTCCTATGGGATCATATATTATATATGCTCCGGTTAACATAGCAGCTATGAATGTGGCTTTAAGAGGTGAAGATTCCAAAAGGGTTCCAATTCTTCCATCAGGTTTTGTGGTTTGTCCAGATGGCAAACCAAATGTAGCTTCATCAAATGGTTCATTGTTGACTGTTGTTTATCAAGTTCTAGCTGGTGTCCCAAGTGATGGAAACAAGGCATTGAATATGCAATTTGTGGCTTCTATCAACACCCTTTTAACCACTACCATTGAAAAAGAGCCTCCAATCATGGAAGACCGTAGGGGATTCTGTTCCACGGAAATGCAGTGTCATCGGTCAATTGTAATATTAGGAAAGGTTGAATACCCCAAACCCTTCCTTGTTTCAAACTTTCAACTTTATCAGAACTCTATCATTCAGTTACATTGGCTAAGAGCTCTTTATGTTCCATCTAACAATTATTAA

Protein:

Promoter(3k):

>AM06G010140.1
TTTTAGATACTGGTTTTTCAAATAACATGAAAGTTCATAAAAATTGGTTAACCATCAATAGAGGAACAAGTAGCATACATTCTTACTAAACCACTAAAGAATGATCGATTTGTATTGTTAAGAGAACTTTTGGTAGTTGTATCTTGCCGGAAGTTTGAATTAATGGCATGTATTGTAGTTAATTCAAACTTAGAAAGTTAGTTAGGTAATTAGATGTTGTGATGGTTAATAGTTGTTATTTTGTTACAAAGAATTTGTACTAGTAGCTACTCAATATGGAATATATGAAATTCTTTCAATCTGTCTATATCAGATTGACAGTGCACAATTCAATAAACATATTCCATCATCATTTCTTCTTCTCTACTTTTCACTTTTCCATTACCTATGTGTGCATCAATTTGTTTCCAACAACACACATAACTATTGGTCATAATAGACAAAGAACCACTGCTTAGTATAACAATAATTTTACTTGTCTAGCTTCTGATATTAACCCTGACAGTAACACATGGATAATAATGATCAAAGATATATGGTGATGAAGTAGTTACCGAAGTGGGAATACCAGTGAAGGCAAAAAAACCAAGCAAGGGAGCATAGAAAACGCTATCAGAGCCCAAAACTCCAAACACTGGCTTTTGGTTCACATACTCAAAAAACGAACCTATCTGTCATAGCAAAAGATAAACACATAAAATAAGTTGAAAAAACAAAAACAAAAGATATCACGGTTCTAAGATTTCAATTTAATCCAGATTTTCAAAGAGATTCGGGCTCACCAGAAAACACAGAAAAGAGCAGAAGAAGACGGAGGCGGCGGCGTGAAGGCGTAGAGGCGTGCAGCGCGTGTGGGCGGTGATTGTGCGTCGTTTTGGTTCGTTCCTCTTCGTTGGCGATTTCAGTTCGCAGGAAGCATAGAGAAGTGAGATGAGGGCTCGCCGGAGCTCCTGGCTGAGGGGTGGTGGTGAGGCTTGAAGTTGGGCAACAATGGTTTGAGATGAGAGAGAACACAGAAGGTCCAGAAAGAGAGAGAGCCGAGGAAGAAGAGTCAAAGATTGGGTAGGGTTTTCTGCGAACGTGAACGTATGATGAAAGGAAAGGAAGATGCGAGAGGGGAGAGAGAGATACGAATGAGAGGGGAGAGAGATACGAATGAGAGAGGAGAGAGATGCGTAGGGTTTTCTGCGAATGAGAGTGAGAGGGAGCGAAGTTGGAAGCCTAAATTTGTTTCGTTTCTATAACGGGTGGTTTTATGACCCGTTATGAAATCCTAAATTTTTGGACTTTCTATAACGGTTATGGAATAGAACCGATATGAAAGATGGTTTTTGCACTTTCTATATCGGTTCCTATGGCAACCGATATAAAAAAAGTAATTTTAATTACAAAACTGCCACCACGTCACTTTTAACATCAGGCCATTTTTAACTGATATAAATGACAGTTATAAAATGCATTTTTTCCACTAGTGGTTAGTGATTCAATATATGATATTGAAAAGAAATTTTCAAACAATCTCCGACATCTTGATAATAAATCTTTTTTGTACCCCTAGGTTGGCGAGACCTATTGTATTCTAAATTGACACTTTATTGAGCATGATTTTTAGATCCAACCCCTTGAAAAAGGTTTAATATATTTGCGGATTAGAAATCATTTTCTTTTTTATATGTAAAACCTAAGACAATTGGTTGTTAAAGTTGATATTTTCTGTAGACACTCGGGTTCGAACACGAAATCTTCATTTGTAAGTTTACACGACATACTTACCACTCTGTCAGTGTAAAAAAAAGAAACCATCTTTTGAGATTTCCTTAAAACACTTTCGTAGACACCTTTTTCATGGATGCCAGCGGAGCAGTCATCTCCTCTATATAGTAACTTAAAAACCATCAAGTTTTGTTGTGATTTTTCCACCATATCAGCCAATTGTAGGCCGAGAACTCTTTCAATTTCATGCATGGTGTTGAATATTTTTATTGTAACATAAATTTAATTTTTTTTATGTTATATAACACATCACAGGGAAATTTCTATCTATTACTTGAAAAACTTCAATTATTGATATAAATTAGAGATAAAAATGAAATTTGTCTCTATTTCTGAATTGAAGACCAATATTATCATTTTCTTTTTATTTTGATCTCTGGTTGATCTTCTGTGATAAAACTTTTTACTTAGTGCAATCTCTCGGGAATACTATCAACATATGTCTTTTACATTCAGAGAGTCTGACATAGAAACTATATTAAAAGTAATAGTAAAATTATAAACCAATAGGCCAAAAAAAAGTGCTAATATCAAATACGCTCTAAAGTCATACCTAAACATTTAGGAATAAAATGTGCTATTATAAATATTTTAATTTTTAAATTAACGTTTATAACTCGACACCTTATGATTTTAGAAGAGTCGGTGGTGACAATTTGCTAAAAGGAAAATGCTATTTTTTGGTATAAGAAAAATGCTATTTATCATGAGGATAATATCACAATGCGCCCTTAAGGTAAAAAACGAATTACTTTTGTCGCTTTTTGTAAAATACGCATAAAGGAAGCTATGTTTTTTTTTAAAAAAAAGTGATGTGCCACTCCGTGAGTTTCACGACCACGCGTTCACATGATATATGTCACATCGTGAGTTTCACGACCACGCGTTCGCGTGATATAGCAGCGATTTTGTTAGAAACAACTTTGTTGGAAGAAAATCTTTTTATATTAAATATATTTAAAAACATTCTATCTACCCTTACTAAAAAAATCCAAAGTAAAATCCATGCCTATAATGTAAAAAAATTATTATTTTTTATTTATTATTTCACTTTTTGTTTCTTTTTTCCTTTTCTCTATTTTCTAGACGTTATATTGAAGATGTCATGAGGAGTTATCAGGGTCTATATAAACACCCTAAAGTTTCACTAATCTCACACTCAAGATAGGGTGAAAGAAAGAAAAACATCCAATATTTGTGAGTGTATTTCATTGTTGAAGTTCAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01852.22	START	218	433	6.40E-35
PF00046.32	Homeodomain	24	78	2.50E-13

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-WOX
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0005515	protein binding	Molecular Function

InterPro

InterPro term	Description
IPR023393	START-like domain superfamily
IPR002913	START domain
IPR009057	Homeobox-like domain superfamily
IPR042160	Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like
IPR017970	Homeobox, conserved site
IPR001356	Homeobox domain

trEMBL

trEMBL term	Description
A0A1S2XAZ4	_

SwissProt

SwissProt term	Description
ROC8_ORYSJ	Homeobox-leucine zipper protein ROC8

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G73360	homeodomain GLABROUS 11
Medicago sativa L.	MsG0680034835.01.T01	_
Oryza sativa L.	LOC_Os08g08820.2	homeobox and START domains containing protein, putative, expressed
Cucumis sativus L.	Csa008795	_
Glycyrrhiza uralensis Fisch.	Glyur000005s00001122.1	_
Codonopsis lanceolata	Cl_chr07_10750T	_
Arachis hypogaea L.	AH14G08890.1	Homeobox-leucine zipper protein HDG11 like

Expression pattern