Gene detail

Detail information of Am06G009020.1 Annotation

Gene ID	Annotation
Am06G009020.1	RAB GTPase homolog B1C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G009020.1	mRNA	Chr06	23904340	23911909	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM06G009020.1
TGTGTTACTAACGCTAATTTAAAACAGTTAAATATTTTTGGTGTTTTCAACGAGAGAAAACGGAAATGCTTAGGAGAAAATATGGATGAGAAGACGCTAGGGATGAATGCCTTTCGATTTCACACTATTGTCACTAATTTATTTTCAAAAGATAATCTCTCTCTCTCATTTGCTATCGAATCCACAATTCTAACCAAGCCCTAATCCCTTAGGTGAATAGTCCTTTGTTGATTCATAAAAGCCCTAATTCCTTAGGCGCATCTACTAACAACAAGCATTAACAACGAGGATTCGCAACATACATCAATTCGAAGAATATTCCTAAGCTACGAATTGAAGGAATTGAAATTCAAACATTCCAATAATAAAATTCCCATTTGATCATTGAATAAAGATTTGTTCTATAATTTTCCAATCATAGAAATGTTAAGCACTGAAATTCAATTCACAAATGAAGAGAGAAAACATTAAGAACATTAACATAAACCAGCAACAATAGTTGTACATCAAAATTCATCCATCCCTAACATTAGGGTTTAGTTACACATGATCAAAGAGAAAGAAAAGGGATTTTTACACATAGGAGATGATGAAGAACGCATGTGAATCTTCAATCCTTGTTCCCAAGTCTCGAATCTTCAACTCCAATCGCCAGGGATCAGCTCTCGCGCGTGCTAGGGTTCCAAAATAGTGCAAAAGTCCTTCAAAACGCGTCCTGGTCATGATTTAACGCGCATTCTGGAGTTTCGCGCGCCAGTTGCGCCCGGCGCGTCACTTACGCGCGAGAAGGAGCTTGCTTGCTGTGAATTTGCGCGTTGCAGCGCCATCTGTGCGCCAGTTGCGCGCATTTTGGCTGAAAGCTCCTAGATCTTGCGCCCTTGAGTCCATTTGCCTGCACTGCTTCGTTCTTCATTTCCACCTAGTCCCTGGGCACAAAAACACGACAAAACCCAGCATAAACACTGCATAGCAAAACAATTTCAAATAGCACAAATTGATACTTTTCATCATACTTTTAATTCATTCATCACCATTTCCACTTAAAAACTCTCTTTAAACCAATGAAACACATCATGTGATGCGGGTTCATCAATCGAGCTCATTAGCATCGTCAACCGGAGAAAAACTTTCAACATCAATATTTTCCTCCGCTTGCTCGCTGGTAGGAGTGGAGGGCGGATGATCTTGCTCATCTGGAGTACCGACCATTGTCTGATTCTCTTGATTTTCAGGAACATCACCACCGGAGGCCATGATCTTCACAAACTCGTTTCGGTATTCGGTTATATCCCTACGGGTTTGTTTGGTCCTCGCCAGATCTAAAACTGCAGAAATGGGGAACGAGATGTTAGGATAAAGAATCGCAAAAAGGGGTTCGCAAACAAGTCGGAACCCGACCTAACGACCCCCACTTTGAGCGAATAAATAAATGGAGGGGTTCAAAACGCAAAAACAAATAAATTAAAGACTAACCTCGAAATAATGCAGATAGGATGATCGGATCTGAAAGCAATCTTTTTGTCGACCTACTGTTGAGTTTCTATCACCTAGTCCGCTTTGTTCGAAGGAAAGCTCGACATTCAAGACCGGTAATCAGAGCAGAAGAGGTTATGCAGCAACAAAACAAGAGGAGGTGACCCTATTTATAGTGGGCAAAAAAAAAATCATGGATTGGGCCTGGAAGTCGAATCAACACGTCCAATCAAAATCCAAAGGTCAAGCGCTAAAAAACAAAACGTCACCATCATTAGCCGCCATCGTAATACGCGCCGTGTCAGAAACATTTAATGTCTGGCACTGAATCCCAAGCGCTGGTCCCTCTGCTCAAAAGAAAGCTTGATGCATCTCAAGATCGACTAAATGAATCAAGCTCGACAAAACCCACGACCAACTTAAGCCGAACCTTTTTTGAGTCCCTCAAAAAGAAAGCTCGGTACATCTTATGATCGGCAACGTAAGGTGACATCAGCTTATCAAGCCAAGATCGCCCCTCAGGCGACCAGACTTGGTGGGCCACTGTTATGGTAATAAGTAAAAGGTCTTAATAATATTTCGCCCCCTGCGAGGCCCAATAACCAACCAGCCCATATTCAGAAAATCTGGCCCAATCAATCAACGGTTCAGATACCTCTGCAAGATCTAACGACTCAGGATCGTCAGAACGAACATCACTCAATCTCTATAAATACCACATTCAATACTCATAAATGTAAGCAACTTCAAAAACTAAACATTGATTCACTCAAATACTGACTTGAGCGTCGGAGTATTCTTGCAGGTACAACACCGTCATCTCAAGATCGAACACCGCTGATCAAGGACGACACCTACCAACTATTTCGGACAACTCATTAAGGTCAAGAGTACGGTACAGGTCAGGAGTACGGTACAGAACAATGACAGATTCCATTTACCAGTATATACTTTAAGCACTACTATCTTCTACCAAACTATATTAATGATTTTAATGTAGTATTCCCTAGAGATGATAAATCTTCACACTTATTCGACTTTGCAGCTCAAAACAAAGCGCAATTACACGAGCATCCGATGACTACTATCCGAAAAACCCAACAACACAGTCTCTACATGTAGCTGCTGTAGCTTTCAACAGCATATTCCTTGGTGAAGTTGTTGTTCCAGATTGGGACATGTTCTATGTATGCCATGGTGTCCTCACTATTTTATCCAATGCATAAACTTGTATCCAACATTAGATTAACCTCCATAACAACTTTTTCTAGAGTCTCCATGATGCAGCTGAGTTTCATGCAGTAGCTAGAGCAGTTGGAGGCTGTGGAGTATATGTAAGGTAAAAAGAAATTGTAACATGGAATTATAGAACTAGAACCTCTTAGAATGACATGTTGTAGTTAAAATATAATAATGACATGAACATATAAAAATATGTAGTCTCTTATAATTTGTTCATTGTAGTGTTTTAGCAGCAACTGACCTCAAAACATGGTGCTATGACAAACAGTGACAAACCTCGCCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00071.25	Ras	111	264	1.30E-58
PF08477.16	Roc	111	218	7.30E-29
PF05691.15	Raffinose_syn	30	110	3.40E-19
PF00025.24	Arf	113	247	4.30E-11

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0046907	intracellular transport	Biological Process
GO:0000325	plant-type vacuole	Cellular Component
GO:0005886	plasma membrane	Cellular Component
GO:0015031	protein transport	Biological Process
GO:0098772	molecular function regulator activity	Molecular Function

InterPro

InterPro term	Description
IPR005225	Small GTP-binding protein domain
IPR001806	Small GTPase
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR008811	Glycosyl hydrolases 36

trEMBL

trEMBL term	Description
A0A835J780	_

SwissProt

SwissProt term	Description
RAB1C_ARATH	Ras-related protein RABB1c

KEGG

KO	Description	Enzyme
K07877	Ras-related protein Rab-2A

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G17170	RAB GTPase homolog B1C
Medicago sativa L.	MsG0680031375.01.T01	_
Oryza sativa L.	LOC_Os02g37420.1	ras-related protein, putative, expressed
Cucumis sativus L.	Csa015104	_
Glycyrrhiza uralensis Fisch.	Glyur000088s00007702.1	_
Codonopsis lanceolata	Cl_chr04_23010T	_
Arachis hypogaea L.	AH14G07180.1	Ras-related protein RABB1c like

Expression pattern