Gene detail

Detail information of Am06G007290.1 Annotation

Gene ID	Annotation
Am06G007290.1	RNA-binding (RRM/RBD/RNP motifs) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G007290.1	mRNA	Chr06	18107441	18111532	+

Sequences

CDS:

>Am06G007290.1
ATGATGCAGCCGGGACCTGGTATGGCTCCTCCCAGCATGGGTCAGCAGCCACCACAGCAGTACCAGCAACCACCACCGCAGCAGCAGCCTCCCTACGTCATGATGCCGCCCCAGCCTCAGGCGCCGCCTCATATGTGGAACCCTTCTTCTCAACAACCGCAGCAGCCTGCTAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTATTGGATGGACGAGAACTACCTCTATACCTGCTTCGCTCATACCGGCGAGGTGACCTCTGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCCGAAGGGTATGGATTTATTGAGTTTAATTCTCGTGCTGCTGCTGAGAGAGTGCTCCAGACATACAACGGTGCTATTATGCCGAACGGTGGACAGAGTTTCAGATTGAATTGGGCAACTTTCAGTGCTGGGGAGAGATCCTCTAGGCACGAGGATGGTCCTGACTATACCATTTTTGTTGGTGATTTGGCTGCGGATGTTACTGATTATCTTCTTCAGGAGACTTTCAGGGCTCGTTTTAACTCGGTGAAGGGTGCGAAAGTCGTGATTGATAGGTTGACTAGCCGGAGTAAGGGTTATGGTTTTGTGAGGTTTGCTGATGAGAGTGAGCAAATGAGGGCTATGACTGAGATGCAGGGGGTTCTTTGTTCCACAAGACCCATGAGGATTGGACCTGCCTCTAATAAAAACCCTGCCACCACTCAGAGTCAGCCGAAAGCTTCATATCAGAATCCCCAAGGACCCCAGAACGAGAATGATCCAAATAATACTACTATTTTTGTTGGCAACTTGGATCCTAATGTCACTGATGATCATCTAAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCTGGCAAGCGATGTGGGTTTGTCCAATTTGCTGACAGGAGCTCTGCAGAAGAGGCACTACGGGTTTTAAATGGAACTCTGTTGGGTGGACAAAATGTTCGTCTTTCATGGGGTCGCAGTCCTTCAAACAAACAGTCTCAGCAAGATCCAAATCAGTGGAGTGCTGCTGGTGCCAGTGCAGGAGGAGCCGGTGGATATTATGGATATGGTCAGGGTTATGAAAATTATGGTTATGCTCCTCCTGCTGGACAGGATCCCAACGTATATGGCAGTTACCCGGGTTATGCCAGTTACCAACCATCGCAGCAACAGCAGCAAATGGGATATAGTTAA

Protein:

Promoter(3k):

>AM06G007290.1
CACCAGACTGAAGGCACATGATAAAGAATTGTATTATAACCATAGGGTCCGTAATTCAGAGATTAATACAAGAAAAATTCACAGTTCAATACAACTTACAAGGTTATTCATAGTTTGATGCTATTGATGTTTCACTAAACCACATGACAACTGAGAAAATTTGAAGTTTGTTTTGAAAATCAATGACAGTAGATAGACATTCATTTTCAGAAATTCTAGGACTGCTGCATTCAAGTGTTAACCCCAAAAACAAAACCATTGCTGTATGAAGGAAGATTGCTAGAAGGCGTGAGGTTTTTCACAGGCGACCGAAAAGGATTTGGTGTCACCGGATGAGTGATGTGCAATCCAGCGTTACGAAGAACTTGCTTAGCATTTACAGATGAAACTTCAGTTTGATCAGTGAAGAATGCAGGCACACCCATTGATTTAATTACATCAAGAGCCCCACTCCAAGTTGAATAGCTTTCTAATCTAGAGTTTAGAGCAATGACGACATGTGGAGAAGGTAGGTAAGAGGCTTCTACCTGATAAACACCTCTCACAAGATTCACTCTAACTCTGCTACCTATTCCTGAAGTTGTACCTGATAAATTCGTCGGAACTTCCGGTCCCACCATCACTATTTGTACATTGCCTGATCCATTAAGTAAATGACCTACTTCTGCAAATGCTGGCATCCAATCTAACTCACCTTCAGGTCCAAGGTAATGAATAATCACCTCCTTGCCTTTCAATATAAGATTCTTTGAACTTATATTGAGAGTAGTTAATATGTGATACACAGTCAATGGATGCGAGAGTATGTCGGCTACAGGACTCGACAGTGGAAGCGAGCGAAGGTTGTAGTACTCCGGCCAGCCAGAGAGAAGAATCGGACTCGAGATGAATTGGTTATTGAATGGTGAGTCATGAGGATATTCAAATTCATCAAGTTCACCCCATAGTTCCTTCAGCCCACCTTTTACAGGAAGGAGACCAAAAGGGCAATGTGAATAGCAACTACACTTTCTCCTCCACATACCCTTTTGGTGAGTATCTAATGATTCAAGCCACTTGCAAGGCTGGTCAGCAGAACAAGCGAACAAGAAAATGTTTATGGCTAGCTCTTCTTCCCTTTCCATCATGGCCTTATAATGTCCACACAAGCTTTTGTGTTTGTCACTCCAATGTTGCTTCTGGCAGATTGAACTGCAGTAAACAACTGCTCTACACCGACCACAACAAATTGATTGTTCGTCGTACACTTCTTTCTCGCACATTGCACACTGTCTCAATCCATTACTCGTGTATGTGTTTGTGTCGCCGAAAGTGTCTTCCCTAGGTGGTTCTACATATTTAGTTGGGGTTGAACCAGCACTCACACTACTAGTTTTTTCATCATAAACCTGACCAGGTGGGTGTGAGATAGTAACAGCAACAAGGTCATAACCTCCCTTAGTTACTTCTGGAGGCCACTGAACATCAACCGTCTCTATAAAAGATTCGAAATGCACCATTGTTGAATACCTCGGACGACTTTCCCTGTCCACCTGAAGTAAAGGGTGGAGCATAGTAATAGCCTTCATGAATGCATAGACAAACCTAAGCTCTTCAAGAGTTGGATTTCTAAATCGAAGATCGCCCGCGTTAGTGCACCGAGCAACATCAACAACAGGAAATCTATCATTGCCTGATGCTTCCAACGACAAAGACTTGATCAATTTTCGATTCGAAGGGAACATCAAAGACTCTACTTCATATGTGACCCTAAGAAGCTCAACATTTGGAACTCGAATTGTCTCTCTAGACCCTGTCATTTTCTTAGCATCATTTTCTGATCTAAACATGTAGAAACCAATGTCCCCTCCATCACCTCCAATGAATTGGGCACAAGGAAATGGCTGTTTCTTACCGCGCCAATCCGAATCTTTTCCAACCCGGACGCCAAATAAGTGCCCCGGACACAACCTTTTCCACGGTTCAGATCTATACAGAGCTGCAGAAGCTTTGTATACTGATCTAATGAAATTGGGAGCAATGCCTTCCACTTTCATCAAGCATGTCCCAGATCCAGGACCAAGCCCAGGTCCACACCCAAATTGTTCTTGATATCTATCAAACAAACCCTTCAAATGTAAATCCATTCTCTTCCCAAGCACCTAACTTCCAAACCCACCACTTCACTCAAACCAAATTGATCAAATACTTGAAAATTAACAAGTAATCGATCTCAGTTCAGGATCATAAAATTTCATTACTCTATTTCACTTCAACATAACGATTTCACAATGTATGCACTAGTAAGTAGTAATCTACTAATCAAAGCAAAATCATAATATGCAACAAACAAAAACCAGAGCTAAAAAACAATCAAGAAAAATCAATTGTTTCGATGAGATAAAATCACAAAATAAAGGATGAGAGATTCATGTCATTACCAGGCCCGCAAAACGGTGACCAGTTTGAACTCTCAGACCCAATTCCGATTCTTTCGTTTTCAGACAAACTTTGAAAATTTGACTTTGGAATTGGAATTGACTGTTAACTAACTGCGGGCGTTATCATTTGGTATCCGTGAGCTCGGAATTCCCAACACGAAATCAGTGCCACCGATATAATCAACGGTCGGAAGATGATCTTCATTAATCAACGGTCAAAATTTGATCTTAATTGGTCGTCCGTACAAGCAAAGCAAATAGTAGTCTCTTACACGCGTCCACTAAACACGGTCGTTTTGTCACCAACCAATCAAATTCCACCACGCAATCAGAAAACGATAAAAATCAAATATCATAATGAAAAATATCTAGTGACTATCCATCACGGACCATGTTCTGAAACATCATCTATCCATCATCACCGTTTAACCACTCACCGCGCAACATTTTTCCTTTTTCGTTTTTAGGGTTAGGGTTTCATCGTTATTTAAATCCAAACGAGACGCCACTTGCTTCTCTCTCTTCGCTATTTCCCTCCCTCCCTCTTTCTCTCTCTAGAAATTTCAGATTCGTGGGAGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	65	130	2.30E-50
PF00076.25	RRM_1	160	223	2.30E-50
PF00076.25	RRM_1	268	331	2.30E-50
PF13893.9	RRM_5	253	337	1.70E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006397	mRNA processing	Biological Process
GO:0003729	mRNA binding	Molecular Function
GO:0005829	cytosol	Cellular Component
GO:0003924	GTPase activity	Molecular Function
GO:0005525	GTP binding	Molecular Function

InterPro

InterPro term	Description
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0A1S2XA75	_

SwissProt

SwissProt term	Description
RB45B_ARATH	Polyadenylate-binding protein RBP45B

KEGG

KO	Description	Enzyme
K25102	tRNA selenocysteine 1-associated protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G11650	RNA-binding (RRM/RBD/RNP motifs) family protein
Medicago sativa L.	MsG0880047641.01.T01	_
Oryza sativa L.	LOC_Os03g37270.1	RNA recognition motif containing protein, putative, expressed
Cucumis sativus L.	Csa025452	_
Glycyrrhiza uralensis Fisch.	Glyur001413s00028468.1	_
Codonopsis lanceolata	Cl_chr04_31200T	_
Arachis hypogaea L.	AH11G28870.1	Polyadenylate-binding protein RBP45B like

Expression pattern