Gene detail

Detail information of Am06G006310.1 Annotation

Gene ID	Annotation
Am06G006310.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G006310.1	mRNA	Chr06	15235143	15241255	+

Sequences

CDS:

>Am06G006310.1
ATGGAGGTTGTTTTGGCATCTTCCTCTATTGATGGTGGGATAGGCTGCTGGGACCTTCAGACAGGTGCTGAGCAGCTACGCTACAAATCAAGTTCCTCCCCTTGTCATGGCCTTGTCTCTGTTGGTGGTCGCTTCCTTGCATCTACTCAGCTTAAAGACCCATCAGCCACCTCTGGTTCTGTTTTCTTCTGGTCCTGGTCTAAGCCTCAAGCTGAAGTTAAGAGCTTTCCTGCCGGACCTATTAAGCCCCTTGCTGCTAATCACTCAGGCACCTATCTGGCCGGTGGAGCTTTGTCAGGTGACATATACTTGTGGGAGGTTGAAACCGGAAGATTGCTTAAGAAGTGGCATGCTCATTTAAGGGCTGTCACTTGCCTGGTATTTTCTGAAGATGACTCACTGCTGATATCTGGATCTGAAAATGGACAAATAAGAGTTTGGTCTCTCTACATGTTATTTGATGATTTGAGAAGCCGGGATGCAAATAATCTTTTTGAGTATAGTTTTCAAGACCACTCCTTGCGTATAACTGATGTTGTGATTGGTTATGGAGGGTGCAATGCAGTAATAGTTTCGGCATCAGATGATCGGACATGTAAGGTATGGAGCTTATCTAGAGGAACACTCCTAAGAAATATAGTTTTCCCTTCAGAAATTAACGCCATCGCATTGGATCCTGCTGAACATGTCTTTTATGCTGGCAGTAGAAATGGAAAAATATTTATCGCTGCACTTAACACTGAAAGCATTGCTACTAGTAATTATGGGATGCATATCATCGGTTCATTTTCTAACCACAGCAAGACAGTTACTTGCTTAGCATACGGCACAGGTGAGAATTTGTTAATCTCTGGCTCCGAGGATGGAATAGTCCGTGTTTGGAATGCTAGAACTCACAACATCGTCCGCGTGTTTAAATACACTAAAGGACCTATAACTAACATTCTTGTTGTTAGACAAGAAATTGACCTAAGCAATCATATATCTAATTTACAAGCACCCTCAAAAAAGAAGGGGGGCAATTTACCCCCTCCTTTGGAAAAATATGCAAATTCAATAGATGAAGATTCGGATATAAAGACTATTGCCAGCCTCGGGGGTAGCAGGACATGCATGGATGTTTCATACTGCAGTTCTCATGCCATATCTAATTACATTAAGGAGCTTCAGCATCAAGGTTCAGCCGCAGCTTCTGAAATCGAGATAGAGAAACTAAAACAGGATTGCCAAAGGTTAATGCAGATGGGTAACCAATGGAAGAAAATGTATGAAAACTTGAATCAGTTTTCTGTAAATGAGCTGCTGGATGATGATGGTCAAGCAAGAAAAGAACCTTAG

Protein:

Promoter(3k):

>AM06G006310.1
AGAATAGCTTGCCAAAGTCCCATTGCTTCCGCTTTTTGTGGTGTGGGTAGACCCGAAAACCATAAAGTCTTGGCTCTATAAAAATCACCCATATCCGTCCTTACACACATGGCAATGCCATACTTATTATTCGAATTAAAAATGGCTGCATCAACATTGCATTTATAAGAACCAGCAGCAGGTCTCCTCCGATAATATTCAGCTGGTTGCCTCGCATTTTCTGCTAAATTCGCTGCTGCACTTCTGTTTCTCGCATCTGTCCATTCGGTCAAAAAATCCAGCGCCTTGCTAACTGATAAATCCACGCCTAATCAATTAGGACTATCAATACCTTTTTTCTTCCAAAATTTGAAATACATATTCATCAAAAATAAAGGAAAGAATTTGAAAGGCAAAACCCACATCTAATCTAATCTAAAAAACCAAAAACAAAAAACAAAAGTAAAAGTGCTACGGCCTATGAAGCCCAGATACGGGATACGACATGATACAAATACAGGGATATGGGAAAATTCAGAAAATCAAGATACGACGCGGATGAGATACTTTAATAAAAAATTAAATTAAAATTTAAATATATAAAAACATAATAGAAAAAATAAAATAGAATAGAAACACAAATAGAAAAAAAACAAAGATGAAAAACAGAAATATTGCATTTTATAGATATGAAAAAAAACTGCCCAAATAGATAAAAAAATCACACAAAATATATGGATGAAAGGAAGAGGACAACCGACACACCTATGTATGAGTGACTAGTCATAAAAAGTAATGGTGGACAAGTAAGTGAGACCACCCGAAATCGTATAATCTGAATAGTCAGTGGCGAAAATAGATGACTTTTTATAGACTAAGATATTCATATTAGTACGTAGTTGCTCAATAAAACATAAGCATATCATTAGTCAATATATGATCATCATATTGTAGAAATAAATATTGTGATCATATCAAGTAGAGATAGTTACGTATATTTATCCCACTCATATCACAATGTATTATTTATTCTATTATTATGTTACAAAAAAACATATAATTTTATCTTTTAGTTATTGAGGTATTAAAGTGTATCATATATGAGTGACAATCATGTGCTTAGTTGGTAAGGTGTATCAAAAATGTATATGAGAAATATATATATCATTAGTTGGTAAGAAGTATCAAAGATGTATCTGAAAAGTATCGAGTCAAATATTTTTTAAAAAAAATTAAAAATTTATTGGATACTCTTTAGATACGTATCGGATGCGTGTCTGTATTGAATACGTATCCAACACAGGTACGTCTCCATTTTTGAAGTATCGGGCCTTCGTAGGCTTACGGCTCACTAGTAAAGACAAAAATAATAGAATTTACCCAAAAAAAGGAGACAAAAATAATAGGCTTAATTACAGTTTTGGTCCCCCTATTTATCCCAATTCACGATTTTGGTCCCTAAAGTTTTAATTTGACGATTTTGGTCCCCCTATTTTCCCAATTTGTAAAATCAAGGTCCCCCTCTTAATTGGTCAAAATTGAAAGTCAATTTTGACTGACTTATCCTACGTGGCAGCCCACGTGGACTGCCACGTAGGCGCACCCCCACCCCCACCCCCTCCACTGTTCTTCTTCCCCACCGTGAACCCCACATCCACTGTTCCTCTTCCCCTCCCACCCCCCCTCCACTGTTCCTCTTCCCCTCCCCCTCCCACCCCCACCTCCGTGAACCCCCCCACAACCACACCCTCTCTCTCCTTCGCATCTCACCGTCCCCCCCACCGATCCTCCCTCAATCACCGTCGCTCTCCCTCCTCTCTCAACCACTGATCCCCCTTTCCCCCTCACTGACCCTAGATTTGCTCTCTACCTCATCACTGTCGCCGATGGAGTGGTGGTTCGCGAAAGGGGAGGAAAAATGAGGCCGTGCGTGCGACGGCGACTGTTTCGTGGAGGGAAGGGGGCGACCGTCCGGTGGTGGGGGTTTGGAGGTTTTTGTGCGAAGATGGAGGGCAGGTGGTTGCGGTGGTGATGCGTGGGTTCGGTGTGGGCAGGTGGTTGCTCTGCGAAGGAAGAAAGGAGAAGATCGAAGGAAGCAGAGGAGAAGATCGAAGGAAGGGGGTGGGGGGTGCGCCTACGTGGCAGTCCACGTGGGCTGCCACGTAGGATAAGTCAGTCAAAATTGACTTTCAATTTTGATCAATTAAGAGGGGGACCTTGATTTTACAAATTGGGAAAATAGGGGGACCAAAATCGTCAAATTAAAACTTTAAGAACCAAAATCGTGAATTGGGATAAATAGGGGGACCAAAACTGTAATTAAGCCAAAATAATAATAGAGTATAAGTAAAAATAAATAAATAAAATAACGATTAAACCCCTTTCCTCAAAAACCCTTAAACCCCTTTCGTTAAACAACGCAGCTGAAGTCGCACGGGCTGAACAGATCGGAAAACAAAAAAATCTTGCCGTCAACGGAGGAAGGAAATCGCTTGCCGGAACAGTACAGGTTTTCTTCCTTTTCCTCTAGTTCTTCTTCCTCTCTCACGGTGCGGCTTTGTAGCGCGGAAAACGCCGCAATTTCTGGCTGCGGTTGCGACCTGGCCGCACCCTTAAATAGCGCTATGACTGTTGAGTAGCGGCGAGTTGCAGCTCCGCACTTGTCCGACGCGACAGTGCCGCTGTTGAAAACTATTTCATGTGTCTTGATTGATGTATGTGAATGATTTCTCTGCATAACGAATGCAGTGTTGTTAGTTTCATCGACTGCATAACTAAACTCACATGTCAAATTGCAACTGATTATTAATTATGAGAAGCTGAAATTAGGGCAAAATGTGAAAACAAAAAGTGGTGCTGTTTCGTGTTCTTTGATCTTTGATGGTGCATAACTAAACTCACATGTCAAGTTGCAATGTCTCATTGAATGCATAATGCGGTGCAAAAATAAAATTTATTATTGGTATTGGAACTTGTTTGTTTTGGTGATGATTATTTATTTGGACTCTGGTGTAGTGAAGG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	111	148	4.30E-19
PF00400.35	WD40	260	295	4.30E-19
PF20426.1	NBCH_WD40	102	319	1.10E-12

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0005656	nuclear pre-replicative complex	Cellular Component
GO:0006261	DNA-templated DNA replication	Biological Process
GO:0006364	rRNA processing	Biological Process
GO:0120330	rixosome complex	Cellular Component
GO:1902184	negative regulation of shoot apical meristem development	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR045227	WD repeat-containing protein WDR18/Ipi3/RID3
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A8B8L5M4	_

SwissProt

SwissProt term	Description
RID3_ARATH	Protein ROOT INITIATION DEFECTIVE 3

KEGG

KO	Description	Enzyme
K14829	pre-rRNA-processing protein IPI3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G49180	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0180001306.01.T01	_
Oryza sativa L.	LOC_Os07g22534.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa009387	_
Glycyrrhiza uralensis Fisch.	Glyur000176s00012097.2	_
Codonopsis lanceolata	Cl_chr05_44720T	_
Arachis hypogaea L.	AH12G13700.2	Protein ROOT INITIATION DEFECTIVE 3 like

Expression pattern