Gene detail

Detail information of Am06G005960.1 Annotation

Gene ID	Annotation
Am06G005960.1	gibberellin 2-oxidase

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005960.1	mRNA	Chr06	14299087	14302174	-

Sequences

CDS:

>Am06G005960.1
ATGGTTGTTCTGTCTAAGCCAACAGTAAACCAATTCTCAGTGGTAAAACCATGCAAACCAGCAACAACCTTGTTGACAGGAATTCCTGTCGTTGACCTATCAAACCCAGAAGCCAAAACTCAAATAGTCAAAGCCTGCAAAGAATTCGGATTCTTTAAGGTAGTAAACCATGGTATTCCATTAGAACTCATGTCCAATTTGGAAAACGAAGCTTTAAGGTTCTTCAAAAAACCACAGTCAGAGAAAGACAGAGCTGGTCCCCCTGACCCTTTTGGTTATGGCAGCAAAAGAATTGGTTCTAACGGTGATATTGGTTGGGTTGAATATATCCTTCTCAACACTAATCCTGATGTTATCTCAAACAAATCTCTTTCTTTCTTCCGACAAAATCCTCAAAATCTCCGGTGTGCTGTGGAGGAATATATTGATGAAGTGAAGAGGATGGGTTGTTTATTATTGGAATTAATGGTGGAAGGGATGGGGATAGGACCAAGGAATGTGTTGAGCAAATTATTGAAAGATGAGAGAAGTGATTCTTGTTTTAGAATTAACCATTACCCACCATGCCCTGAAGCAACATTGAATGGAGGGAATTTGGTGGGTTTTGGGGAGCATACAGACCCACAGATAATATCTGTCTTGAGATCTAATAGCACATCTGGACTTCAAATTTGTCTCAATGATGATGCTACTTGGGTTTCAGTCCCACCTGATCATACTTCTTTTTTCATCAATGTTGGTGATACTCTTCAGGTATTGACTAATGGGATGTTTAAAAGTGTAAAGCACAGGGTATTAGCAGATACAACAAAGTCAAGGTTGTCGATGATATACTTTGGAGGACCACCTTTGAATGAAAAGATAACACCATTACCATCACTCATCTTAAAAAAAGAAGAAAGCTTGTACAAAGAGTTCACATGGTTTGAGTACAAAAAGGCTATGTACAATACAAGGCTATCTGATTGTAGGCTTGGTTCTTTTGAGAAATCTTCTGCCAAATAG

Protein:

Promoter(3k):

>AM06G005960.1
TGTGCTTGAGAAGCAACCGACAGAACAGATGGCTCGACCTTCTTTTTGGCCTCTCGAGGGCGATGGGTTTGGACTCCCAGTCCGTGATCTTGGTCCGCAGATCAGAAATCGTACCCTCGAGCTCCTTCACCCGAAGTTTCTCTGTCTTAACCTCCCCCTCAGCAGCAACCTGGGCAGCCTTGGCGTCATCGCGCTCTTTGGTCAATCCATTCACTGATTCCTCCGCCTTCAAAAGAGCGTCTGAGGTTGGCTTTAGGGCGTTCTTTGCTTCTTCCAGCTCCTTCTTGGCTGCATCCCGTTCTTTCCGCAGTGCTTCAAGATGTTTATAGCAGCTTTTTAGCTTATCAGATTTGTCAATCAAATCACCCTCCAACCACAAGTTTCTGGCTTCGAGGGCGTTACCTGCCATTCGGTTCTCCTCCTCCTGTTTCCACTTTATAAAGAGATCTGAAGCGGCCTTGCACACTTGGGCCACAACCTCGAGGGGATCGTCCATCTAATGGTCGTAGTCGGAGGCCGTCAGCTTCTCCAAATTGACCTTGGGCGACCTGCTCTAGCGACCCATCTTGGCCGGCTTGGCTTTCTTTTTGGGAGGGTCGGAATGTCCATCAGACAGAGCTACAGCTTTGTTCCTTGCCTCAAGGGCGTTCGCCCGCCTCTTCTTCGAAGAAACGCCCGCCTGATCGTCCGCCCCTTGGTCGACCAAGGGAGTCTGAAACTCCTCCTCGACGCGAGGAACGGGCACCGGGGAAGCGTTGGTGGAGCCCTGGGCCTGCGCTGGCCCCTGCTGAATCAGCGCCTTCAGTCCTTGAAAACCCATCGATCCCGCCATCTTATCTGCAAAATAGAAACAGAGCGGGTTAGCATATAACGCAGAATGCAAAAATTGTGAAAAGTGAATGTAACCGATCCACGAGGAACGGGCATTGTCCGATTTAACTAAAACCTACCCAAAGCAGATTTGACTTCACTCGAACTCTTGGCTCCGATTACTGACCTCACGGGAATCATCCCGTTTTCAAGGTAGGTGACCGTGTTTTGAAGTAGCCGAAGCGTCTCCTCGTCGTCTTCGTCAAGACGGTCCTCTTTAAAGCTATAAGTGGACGGTATCGTGTTGTAGTGACTTTTCGACCAGGCGAAAGGGAACTTGGTGTCCTTGACGTCCCTCTTTTCGTTTAGAACCGCCACCAGATCGATAGCATTGGAGCTAACCGGGGCAACCCAGAGATAGTTGTGCTTCCAAGGCTTCATTGAATCCGCAAACGCCCGAAAAAGTTTATAACCAGGGTGAGCTTTTATGCTGAGATGCTCGAACCGGCTTTCCGCAGCGGCTCACCTCAAAAATTGTGAAGAATAACCTCCTGGAGCAAGGTCGATCCAGCTCACCCATCAACAGTTCGAACGCCCTCAGAAACCCCCAGCCGTTGGGATGCAATTGGGAGGGGGAGACTCCAAGATAACGAAGGGTCCGCCTCTGAAAGTCCTTAAAGGGCGGGCGCTCCCGTAGATGAAGTTGCACGGTGGAATACATGGTGAACTTAAGCTCCTGGGGGAAGGTCGCTATGTGCTCGTCCCGAGATACCCCCTCGACTAGCCAGTCTTGACCAACTTCTCCAACTAAGTGCATGAACACCTCGAGTACGTCCATGCCTAGTCTAATGGTCGACCTCGTCTCAGGCAGCACCTCGGAGACCCAAGAATAATCCACCACTTGTCGCATCCACCACTCTAGGAAGAAAACAACTAATTACAAATATTTAAAAAATAATATTTTTTTGGGTAAACCCGGGTATCCACCGCATGGACAGCAGTGACTAACCCCTCGCTCATTGGAGGTGCCTCGAGGGGCAGGAGAGCTGGCCCAGAGTTTTAACGCTGCTCCGTACCCAAGGTGGGAATCGAATCACCGACTCTTGATTAAGAGAGGAATAACCCCAACCGCCGAACCCCACGGTCTCGCTTATTTAAAAAATAATACGAAAGAACTTTGTAAAACCGGCTGAAAAGAAAATGTTTTTCATATCATTTTCTTACACCAGTGTAGGGATGGATAGTGGGGGTAAAGAATGAAAAAAAAAATGATGCTCAAATCCGTAAACATCATGTGACATGTGTAGGACCCATATGCAGAATCTTCTTTTTTTTTTAAAAAAATACTTTAGATTCTTAAAAGTATTTCTATTCCAAGAAATTTCCATAATATTGGTCTCTCATTACACCCTAAATTTCCATGCTAATTATGATATTAAAAAAATATGTCAAAAAATACTACAATATTAAAAAATAATCATAACACGCCGCGTAATTGAAGTGATGAACATTGTGTTATACAAATTAGAAAGAGAAGAATTTTTCACCTGACACACAAATTTTATTGAATCTCAAAGTAGACGGCCATTTATTATAATTTTTTTTGTTGATAAATATAATATTTTTGTTTTTGACAAAAAGGAAGTGTGAACAAATCAAATACATATAGTCGCTGTTCTTCGAAGTTGCTTTCTTAAAGTAAATATATAAATATCCACCTTTTTAAACCAAAATATTCAACCAGTATGAATGAAAGAAAAGAAAAGAAAAGTAACACAAAAGGTGAAAATTACATATGAAATACTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATACTATAAATGTGAGTGCCAGGGAGACAATGAGAGGCAGATAGAAAATCTATATAGTTTGTAACGCCTTTGCCTTAGTACTTCTGATGCACCACCAATAACAATTCTCACCCATTTCTCCATTTAAAACCTCTCTCTCCTTAACACCCTTCAGCTCAAACTCTCTCTAAATCCTCTTCTTCTTCTTCTTATTATTATTTCTTCTGTCTTCATTTTTTATTTATTTATCAAAGTTCAGTAGCAAACAAGAAACCGAAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03171.23	2OG-FeII_Oxy	178	280	3.20E-25
PF14226.9	DIOX_N	28	115	6.20E-16

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009416	response to light stimulus	Biological Process
GO:0046872	metal ion binding	Molecular Function
GO:0031418	L-ascorbic acid binding	Molecular Function
GO:0002238	response to molecule of fungal origin	Biological Process
GO:0009805	coumarin biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR005123	Oxoglutarate/iron-dependent dioxygenase
IPR026992	Non-haem dioxygenase N-terminal domain
IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
IPR027443	Isopenicillin N synthase-like superfamily

trEMBL

trEMBL term	Description
G7IPV5	_

SwissProt

SwissProt term	Description
G2OX_PHACN	Gibberellin 2-beta-dioxygenase

KEGG

KO	Description	Enzyme
K04125	gibberellin 2beta-dioxygenase	[EC: 1.14.11.13]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G30040	gibberellin 2-oxidase
Medicago sativa L.	MsG0280007043.01.T01	_
Oryza sativa L.	LOC_Os01g55240.1	gibberellin 2-beta-dioxygenase, putative, expressed
Cucumis sativus L.	Csa022173	_
Glycyrrhiza uralensis Fisch.	Glyur000649s00025275.1	_
Codonopsis lanceolata	Cl_chr04_23570T	_
Arachis hypogaea L.	AH13G49610.1	Gibberellin 2-beta-dioxygenase like

Expression pattern