Gene detail

Detail information of Am06G005920.1 Annotation

Gene ID	Annotation
Am06G005920.1	cullin4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005920.1	mRNA	Chr06	14041884	14063128	-

Sequences

CDS:

>Am06G005920.1
ATGTCTCTCCCCACCAAACGGTCAGGCGGCGCTCCTTCACCCTCCTCCCACACATCCACACCTCCTATGAAAAAGGCCAAGGCCCAGGCCCAAGCCCAAGCCCAAGCCGTTTTCGACCCTTCTTCATACGACGGCGTTTCTGACCCTTCCTCCATGCCCCTCGACGACGATCTCAAACCCGACCTTCCCAATGCTCGCGGCGTCATGGCCGCTAATCTATCCCGTAAGAAAGCTACTCCTCCTCAACCCCTCAGGAAGTTTCAAATCAAGCTCCACAGAGCTCTCCCGACCTTACCCTCAAATTTTGAGGAGGAGACATGGGCAAAACTGAAGTCTGCTATTTGTGCTATATTTTTGAAGCAACGCGGCTCTACTGATTTGGAGAACCTTTATCAGGCTGTGAATGATCTTTGTCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGTACACATATCTGCAGCACTGCAGTCTTTGGTTGGACAAAGCTCAGATTTGGTTGTATTTCTATCTCTAGTTGAGAGATGTTGGCAGAATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCTTTGTATCTTGATAGGACATATGTGAAGCAAACAGCCAATGTACGGTCATTATGGGACATGGGCCTACAACTTTTTCGCAAACATCTTTCATTGTCTACTGAAGTACAACACAAAACTGTTACCGGTCTTCTACGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCGTTCCTTGAATTCACGTCTGAATTTTATGCCGCTGAAGGCATGAAATACATGCAGCAATCAGATGTTCCAGATTACTTAAAGCATGTGGAGACAAGATTGCAAGAGGAACATGACAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACGGCAGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGACAAGGGTTTCTCTATGCTTATGGGTGGGAATCGTGTTGAAGACCTTCAAAGAATGTACTCACTCTTTACAAGGGTCAATGCTCTCGAATCACTGAGGCAGGGCCTTAGTTCATACATCAGGAGAACTGGGCAGGGTATTGTTATGGACGAGGAGAAAGATAAAGATATGGTTTCATCCCTTCTGGAATTTAAGGCTTCTCTTGACATCACATGGGAAGAAAGCTTTGTCAAAAATGAAGCATTCTCTAACACTATCAAAGAAGCATTTGAGCACCTTATCAATCTCCGTCAGAACCGACCTGCAGAGTTGATTGCGAAGTTTTTGGATGAGAAACTTCGTGCAGGTAATAAGGGTACTTCAGAAGAGGAATTAGAGTGTACACTTGATAAGGTCCTTGTGTTGTTCAGGTTCATTCAGGGCAAGGATGTGTTCGAGGCATTCTATAAGAAAGATCTTGCTAAGAGACTGTTGTTAGGAAAGAGTGCTTCTATTGACGCAGAGAAATCTATGATATCCAAGTTGAAGACTGAGTGTGGCAGCCAATTCACAAACAAACTAGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAGTCATCCCAGGCGAGAACAAAACTCCCATCTGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCGACATATCCACCCATGGACGTCAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAATTCTATCTAAGCAAATACAGTGGGAGGCGTCTGATGTGGCAAAATTCACTAGGTCACTGTGTCCTAAAAGCAGATTTTCCAAAAGGGAAAAAGGAGTTGGCAGTCTCCCTATTTCAGACTGTTGTTCTGATGCTATTCAATGATGCTGAGAAACTAAGCTTTCAAGACATCAAGGATTCTACGAGTATTGAAGAGAAGGAACTGAAGAGGACCCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACTAAAGACGCCAAAGGGTAGAGATGTGGAAGATGAAGACTCATTTGTTTTTAATGATGGGTTTACTGCGCCCCTTTACCGTATAAAGGTGAATGCAATCCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACAGAAAGAGTTTTCCAAGACCGTCAATATCAGGTTGATGCCGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCATACCCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCAATTAAACCAGCTGATTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGGGACAAGAGCAACCCTCAAATATACAATTACCTGGCTTAG

Protein:

Promoter(3k):

>AM06G005920.1
ATTTAAACAGGTTGGTTTTTTTTTGGTGTAGTGTGGTTCAGTTCAAAATTTCAATCCACACAAAAACATCAAAATATAGAAAAACCGGTCCTTTTAAGGTAGGGAAATGCTCTAATTTGACTATGATGGTCAAATGTACTTTTGAACCTTGTTAACCAACAGTAGCCAATTTTTCATTATTTCAAAGTTTTACCCAATAGTTTATTTAATTTACAGTTTTAGCCCATGTTTTGTTGATACACCAGACAAGAGTAGGGATGTCAATTTGGGCCCGGCCCAGTGCGCCGGCCCACTGGCCCGATTTTTTGGGCGGGCCTGGGCTCTAAAAATAGTAGCCCAAAATGAATGGTATGTTTTTTGGCCCGGCCCGATTGGCCCGATGATATAATTGGGCCGGGCCGGGCCGGCCCATGGGCTTCGGGCCGGCCCGTTTCTTTTTACTTTTATAATAATATATAATGTAAATAATATAATGTATAATATTTTTTTGAAGATAATATATGTTTTAATATTGTTTTGAAGATAATATATAATGTTTTTTTGAAGATAATATATGTAAATAATATTTTTATAATAATATATAATGTAAATAATATTTTTTTGAAGATAATATATGTTATAATGTATAATGTTTTTTGAAGATAATATAATGTATAATATTTCATAAAAATATGTTTTAATATTGGGCCGGCCCATTGGGCTGGCCCGTGGGTCCGTGGGCCAGTGTTGGGCGGGCCTGGGCCTTGAATTTCGCAACCCATTAGAATATTGGGCCGGCCCGACCCTGCCCATATACACTGTTTGGCCCTATGGGCCGGGCCGGGCCGGCCCGAGCCCGGCCCATTGACATCCCTAGACAAGAGTCTCAACTCAAAACAATCCAATCCACCTTATCTATTCTATGCCAAAGCAAAGACAGGGATGATGTTGTTATCTACACCCTCTATGTTCTCTTTCGTTCCGTTCCAACCCCAGCAAACTGTACAGTGGTAACCATTACAACAACACCTTATAACACCCCTCGAATCCCAGTCTCTTCTCATGTTTTTGGGGATCACTATTTAAATTTTTTGTTGTTGTTGTTGTTGAGCTCACTTTGCTTCTCTATTCGTTCTCTCTGATTTTTCTGATACAGATTGCTTGTTGGAAGTGGGAGTGGGTTTGGGATTTGACTAAAGATGTGATTTTGGGTCTGGTTATTATTTTTTAATTGATATAATAATTTTATAACAATAATAATTTTTTATAATTAAAAATTAGTGCTTACGGGGCGAGAAAGCAAATCAAATCTCTCACTGGTGAAACACTAAATTTGACCGTTGGATATTGTTTAAAATGCTATGAATGGTTAAGATTGAATCGACCAATATTAAATTTCAACAATTGATGAATTTTTATACTACATCCAACAGTCAATTTTAGTGTTTCACTAGTGAAAGATTTAATTTGCTTTTTCACCCAGAAGCACCTTAAATAAATGTTCTAACCAAATAATTTATTGTTTAATTGATTAAATTTTAACGTGACAAAATGGGTGCTTCTAGGGTGAAAGAGCAAATTAAATCTTTCATCGTGAAACACTAAAATTGACCATTGGATGTAGTATAAAAATTCATCAATGGTTGAGATTTAATATTGGTTGATTCAATCTTAACCATTTATAGCATTTTAAACAATATCCAACGGTCAATTTTAGTGTTCACCGGTGAGGGATTTGATTTGCACCGGTGAGAGATTTGATTTGAGTGAGGGAGCAAATCAAATCCCTCACCGGTAAACCAGTAAATATGACCGTAGGATGTAGTATAAAAATTCATCAACGGTTGAGAGTCAATTCTGGTTGATTCAATCTTAACCACTCATAGAATTTTACACAATATCCTACGGTCAATTTTAGTGGTTCACCGGTGAGGGACTTGATTTGCTCCCTCACCCTAGAACCACCCGTATGTTTGGGGTACTTTAGGATTCAGAAATTTTTTTAACTCTTCAAATACCAGAATTTTCTTCGTAAATAACTGGTTTGGTAAAAAGTAATAATAAGTTTGTAACAAAATACGTAGAATGCGATGCTGACAGTGTATTTTGGGGGTAATTTAGCATTCCGGAAAATTTTAGATGTTCAAATACGGGAAGTTCATTCCTCAATAACCTTTTTGATGAAAAACAAAATAATTTTGTGACAAAATACATAAAGTGTGATGGAGGCATTGTGTTTTGGGGTATTTTAGGATCCTGAAAAAAAGTTACATGTCCAAATTGGTGTTTTCTTCTTTGTTTTGATAATTTCGCACCAACGAGTATTAGAAGAATATTTAAATTGGTGATTAGTTTTAAATCAAACTCGTCATGAAACCTACGTACGTGATTCATTTTCTAATTGTGTTGTCTTCTTTTCTCTTTAATTATGAGTTAAATTTTTATATTTCTGATGAATATAGATAACGTTATTAAAAAATTTCAGACTTTTTCTTCTTATTATCTGTGTAAGTTCAATTCCAATGTCTGTGTTGAAGTGTATTTTTAATTTTATAATAATGTTATTTAATTCCCAACATTTTCTTTCAACTTTGTATAGGTGTTTTATTTTAATGGTGGTTTTAATTCTACCCTGCATGATGTATTGATGTACTTCCTCCAGACTTAAATATAAACAAAAACAACTAACTTTACATATATTAAGATTTAAGAATAGTAGTTTTATGCATTTAATTTTATTGGATTCATGAAAAAAATAAATACATTTACTAAACTATTCCTAATTAATTGTCACATTCTCGCAACATTAATGAGTTGATTTAATGTATTTATACGATAAAAGGACCAGAAAAACTAAACCAAAAAAAAAAAATGAAAGTTGAGCCCCGTGTGTGAGACTGTGCACCATAGGCACATCCGAAGGCCGATCTGTTTGGCTGCGAACGAAGAAAGACGGACAATACTCAATAGAATACAATAATGGTGTGTTGAGGAGGCGAGTGAGTGAGTTCTGTTCATTTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00888.25	Cullin	107	704	5.30E-207
PF10557.12	Cullin_Nedd8	735	795	1.70E-22

Gene family

Gene family	Subfamily
Ubiquitin Family	Cullin
Ubiquitin Family	Cullin

Gene Ontology

GO term	Description	Category
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0016567	protein ubiquitination	Biological Process
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR001373	Cullin, N-terminal
IPR016157	Cullin, conserved site
IPR016159	Cullin repeat-like-containing domain superfamily
IPR019559	Cullin protein, neddylation domain
IPR036317	Cullin homology domain superfamily
IPR016158	Cullin homology domain
IPR045093	Cullin

trEMBL

trEMBL term	Description
A0AAN9LBT1	_

SwissProt

SwissProt term	Description
CUL4_ARATH	Cullin-4

KEGG

KO	Description	Enzyme
K10609	cullin 4
K03869	cullin 3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G46210	cullin4
Medicago sativa L.	MsG0280007025.01.T01	_
Oryza sativa L.	LOC_Os03g57290.1	cullin, putative, expressed
Cucumis sativus L.	Csa020252	_
Glycyrrhiza uralensis Fisch.	Glyur001114s00030042.1	_
Codonopsis lanceolata	Cl_chr03_09640T	_
Arachis hypogaea L.	AH10G00280.1	Cullin-4 like

Expression pattern