| Gene ID | Annotation |
|---|---|
| Am06G005720.1 | breast cancer susceptibility1 |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am06G005720.1 | mRNA | Chr06 | 13489774 | 13496260 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13771.9 | zf-HC5HC2H | 645 | 723 | 1.50E-11 |
| PF13923.9 | zf-C3HC4_2 | 12 | 50 | 5.80E-09 |
| PF00097.28 | zf-C3HC4 | 13 | 50 | 1.60E-07 |
| PF13639.9 | zf-RING_2 | 12 | 51 | 1.70E-07 |
| PF13920.9 | zf-C3HC4_3 | 10 | 56 | 1.90E-07 |
| PF13832.9 | zf-HC5HC2H_2 | 643 | 713 | 4.00E-06 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | RING |
| GO term | Description | Category |
|---|---|---|
| GO:0005886 | plasma membrane | Cellular Component |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process |
| GO:0006310 | DNA recombination | Biological Process |
| GO:0071480 | cellular response to gamma radiation | Biological Process |
| GO:0016567 | protein ubiquitination | Biological Process |
| InterPro term | Description |
|---|---|
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR001965 | Zinc finger, PHD-type |
| IPR034732 | Extended PHD (ePHD) domain |
| IPR036420 | BRCT domain superfamily |
| IPR001357 | BRCT domain |
| IPR031099 | BRCA1-associated |
| trEMBL term | Description |
|---|---|
| A0A3Q7Y7S3 | _ |
| SwissProt term | Description |
|---|---|
| BRCA1_ARATH | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog |
| KO | Description | Enzyme |
|---|---|---|
| K10683 | BRCA1-associated RING domain protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G21070 | breast cancer susceptibility1 |
| Medicago sativa L. | MsG0280007003.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g43610.1 | ATBARD1/BARD1, putative, expressed |
| Cucumis sativus L. | Csa000742 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000413s00015453.1 | _ |
| Codonopsis lanceolata | Cl_chr07_16890T | _ |
| Arachis hypogaea L. | AH20G05090.1 | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog like |