Gene detail

Detail information of Am06G005610.1 Annotation

Gene ID	Annotation
Am06G005610.1	auxin response factor 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005610.1	mRNA	Chr06	13302452	13308478	-

Sequences

CDS:

>Am06G005610.1
ATGAGATTCTCTTCAGCTGGTTTTAGTCCTCCACCTCAGGAAGGGGAAAAGAGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCCCTTGTCTCTTTACCTGCAGTTGGAAGTAGAGTAGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCTACCAACAAGGAAGTTGATACTCATATTCCAAACGTTCCGAGCTTACCTCCTCAGCTCGTTTGTCAACTTCATAATTTGACTATGCATGCTGATGTGGAGACCGATGAAGTGTACGCACAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAAGCATACCTTCCAGCAGAGTTGGGAACTCCAAGTAAACAGCCTACGAACTACTTCTGCAAGACTTTGACTGCTAGCGATACGAGCACTCATGGGGGATTCTCTGTGCCTCGTCGTGCGGCTGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAACAACCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCACGGTAATGAATGGAAATTCAGACACATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACTACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTCGCCGGTGATTCTGTGCTGTTTATCTGGAACGATAAGAATCAATTGCTTCTTGGCATCCGCCGTGCTAACCGACCGCAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACCTGGGGCTTCTTGCTGCCGCAGCTCATGCAGCTGCAACAAACAGTCGTTTCACTATTTTCTATAACCCGCGTGCCAGTCCTTCAGAATTCGTTATACCGTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGTTGTTTGAAACAGAGGAGTCTAGTGTGCGACGATACATGGGTACGATAACTGGCATTACTGACATGGATCCTGTCCGGTGGCCGAACTCACATTGGCGCTCAGTAAAGGTTGGATGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTCTCTTTGTGGGAAATTGAACCATTAACGACATTTCCTATGTATCCATCCCCATTCCCCCTTAGGCTCAAGCGACCGTGGCCTCCAGGATTGCCATCATTCCATGGCATGAAGGATGAGGATTTGGGCATGAATTCTCCTTTGTTATGGCTCCGAGACACCGATAGAGGGCTTCAATCTCTTAATTTTCAGGGGATTGGTGTTAATCCTTGGATGCAGCCAAGGTTTGATCCCTCCATGCTAAATATGCAGACAGATATGTATCAAGCCGTGGCTGCTGCTGCACTTCAGGACATGAGGAGCGTCGATCCTTCCAAACAGCATTTACTTCAATTTCAGCAACCACAGAACTTTCCAAACAGGACTGCTGCTTTAATGCAGGCCCAGATGCTGCAACAGTCACAACAGCCTCAACAGATTTTCCAAAACAATCAAGAGAATCAACATTCATCGCAATCTCAGCCACAAACTCAGACTCAGCTTCAACAGCATCTACAGAATCAGCACTCTTTCAATAGTCAGCAGCACCATCATCAAATCCAGCAGCAGCAACGCCAACATCAACAAACGCAACAGCAACCGGTAGATAATCAGCAAAATTCTAGTGCAGTTTCTACAATGTCACAGTTTGTTTCAGAATCTCATTCTCAATCACCACCTATGCAAGCTCTTTCTTCACTATGCCAACAACAAAGTTTTTCTGATTCAAATGTAAACTCTTCTGCGACTACTATTGTTTCTCCGCACAGTATGTTGGGCTCGTTTACTCAGGATGAAACATCTCATCTTCTGAATCTTCCTAGAACAAGCTCTTGGGTTCCTGTTCAAAATTCAACTGGGTGGCCCTCCAAGCGCATTGCAGTGGATCCTCTCCTTTCTTCTGGAGTATCTCAATGTATTCTGCCTCAGGTGGATCAGCCGCAGAGTACCGTATCTCAAAATGCTCAAAATGCTATTACATTGCCACCATTCCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGGGAAATGATCCACAGAGTCATCTTTTATTTGGTTTCAATATAGAGCCTTCATCTCTTCTAATGCATAACGGGATGTCGAGCTTTAAGGGGATCGGCACCAACAATGACTCAACCATTCCCTATCAAACTTCTAATTATCTGAATACCGCAGGAACCAATTCATCCTTGAATCAAGGAGTTACACCTAGTAGTATTGGTGAATCGGGTTTCTTGCATACACCAGAAGAAAATGGCGGGCAAGGAAACAATCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACCAAATTCAGCAGCTACCATGAGCTGCGGGGTGAACTAGCTCGAATGTTTGGGCTAGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGACGTTCTTCTCCTCGGTGACGGCCCCTGGCCGGAATTCGTGAATAGTGTCTGGTGCATCAAGATACTCTCACCCGAGGAAGTACAGCAAATGGGCAACACAGGGCTCGGGCTGTTGAACTCGATTCCGATTCAGAGGCTTTCTAATGGCATCTGTGACGACTATGTGAGCCGTCAAGATCCAAGAAATTTAAGCACTGGGATAACTGCAGTAGGATCTCTGGACTACTGA

Protein:

Promoter(3k):

>AM06G005610.1
ATTCTCTTTTTTTACACTAATGTTAATTAGTAAAACAAACCGCCTCGTGTTAACGGCCTCGTGTTAACGGTTAACACGACAAGTATGAAGTTATTTTCTTTGCCTATAAATATTAGAACTTTTTGACCAAAAAAAAAAATTAGAACTTACTATGTATGTTAGTTTGGATACTCCATTGAACTCCTAAACATCTCGGTCAAGCACCCATTGAGATAAAGTACCCTCTTGCCATTTTTTTCATTCAATGTTAGAAGAATTGAGAAAAGAAAAAAAAAGAACAAAGAAAGAAATAAATGCAATTCTTATTGAATGGTAAATAGAAATTTTTACAATGATAAAAAGTAATATAATTACGATGAGCATAAGATACACTTTATATAGTAATTCTAACTAAGCTAACTAACTTGTAATTAATCTAACTACTTACCACTATTTTTAACTAACTCCAATTTATTCTACCATTCAATACAATTTTACACCCAATATTTCCTTACTTTAATTTCTTCTCATTTATATTTAAATTCTTTTTACTCTTCGGTACATTTTACATTCCATGCACTTATAATTGATTATTGATGCATTCTATATTTTAATTTCACCTTCTTTAATTTCCTTCATTGTACTTTGCAACAATTATTCTTTAAGTTACTGTTTTTTCTTCATTCTTTGCCAGTTACATGCTTTTACCTATTTTAAAGTCATCTCCATGTTTTTCTTATTCTTTTTCTTGCATTATTTCTTCATGGTTCTTTTCACTTTTTTGTTTGTTTTTTAATCTTCCACATTTCCTTTGTTTCATTTCCGCATGTTTCTCTTTGCCAAAATATGATAAGGATCCTTGACCACTTACCAAGTTGATTCTTCGTAAAACCTTATTAATTTGTAAATGGCAGAATCCTTGACAATTGCTGTCAAAAATGCAAGTTCATATAACATGCTATTTTGGCGAAATATCAAATTTATTTTAGTATTTTTGTGTCTATAGATGAAGTGACAAACATCACCTAGTAAATTCACACACATTAAATGTGTTAAGAGTCCCACATCGGATGTGATATGGCCTGAAAATGAGTTTATAAGTGGGAGGCATCCCTCACTTTACAAGCCGGTTTTGTGGGGTTGAGTTAGGCCTTAACCACATTCTAAGATGGTATCAGAGCCTATGCAAGATCCGTTGGGCCACCCATTGTTGGGTCATGCTCCAGATGTCTATTCCTGGGCCACTTGAGTTTATAAGTGGGAGGCATCCCTCACTTTACAAGCCGGTTTTGTGGGGTTGAGTTAGGCCTTAACCACATTCTAAGATGGTATCAGAGCCTATCCAAGATCCGTTGGGCCACCCATTGTTGGGTCATGCTCCAGATGTCTATTCCTGGGCCACTTGGGTCACGCTCCAGATGTCTATTCCTGGGCGTGAGGGGGGTGTGTTAAGAGTCCCACATCGGATGTGATATGGCCTGAAAATGAGTTTATAAGTGGGAGGCATCCATCACTTTACAAGCCGGTTTTGTAGAGTTGAGTTAGGCCTTAACCACATTCTAAGAAAATGGATAATTCAAGTTTGAACTTGGATAACCACGAAAAATATCCAACCTAATAACATCATTATTTCTAATAGTGCTAAGTCCGACTCATTTGTTTGTTTATTAACAAATTTAGTAAAAAACTTGACAAAACCAAATTCTACAATATACAGTAAAAAATATTATTCAACCATTAGATAAACAAAAATCATGTATTTCTATATTTTTTTTGACTAAATGTATTTCTATTGTTAATGATAGAGTGCACCACGGTCTAATTTTTTTTTACACAAACAGTCAATAATAATATATAATATAAATGACTTTTATAGTAGTCTGGAGAAGACTCATCATTTTTAGTGAATTAGCAATCGATGATTAATTGAAGTCGTATAATTTCACATCGGTGTATATAAATTATATTTATATATATTAAATTAACCGTGAAAGTGAAAACCGTCAAAAAAAAGCAGTCAAATAGAAAACTGTTGAATGATGATGACGGTAGTACAGTGAATCTTAGGCAGATGTAAATTTCCCTCGTTGGTTGTCTGAAAATGAAATGGTGGGCACGAAAAAGTAACAATAAAATAAAAATACAAAATTATGAAACCTTCTCTCTCTCCCTTGAAAAAAATGTGCACTCGTACACTCTCTCTTTCTCCCTCTTAAAAGTACACCCCAAAATAATGGCGGTTGAAGTTCTCTGATTGATTGAAGCTGAGAGAGAGAATTAGAAATAGAGAGAGAGAAGAGAGAGAAATTGATTATAGGGTAAAGCAACAGTATCATAGCATGGACACCAAGTTACTATTACTAGTAGAAGTAGCACCATGACCACCACAAATTATCACAAACACAAAAAACCATTGCTTCCCATTTTTCCTTTACTAGAAAAATCAACACCCAACACTATTCTTTTGGTCTCCCTCTCTTAAATTTACAAACTTGATCTTCTAACACTCTTTCGTGTGTTGTTCTTTTTTCTGGGTTAGTGAGATCTTCTCTCTCCTCTTAGCTTCACTACTTCACTGAGATCTATTTGCTTTTCAAGTTTTCCCCTTTATTGAACTTCTTGGTCTAGGGAAAGAGAAGCATATAGTGGAGTTAATTTTGTGTGTGTAATGAAGAGTTATTATGGTGAAGGTTGGAAGTTGGGGGTTGAGGAAAAATAGAAGCGAACGTAAAGGAATTGTCTTTTGTTGTGAAACTGGTTTTGGTTGAGGTTTTAAGAGTGAGGAATCTTGTAGGTATATTTAGATATGAATGGTTTATTTTTGGTTGGTGAAGGGGGAAAGAGTGTAACAAAGAATGATATTCTGTAACAGAAAGGAAAAGAAGAAAAGGCTTGGTTTTTGGTGGGGGTGTCATTTTCTTAGAATTTTGTTGCTTAATTGGTCTACTTAGAGAGAGTGTTGTGTTTTGATTGTGAGCTCAATTTTAAGTTTATAAATTGCTCAAATCTTCTTTTACTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06507.16	Auxin_resp	253	336	3.90E-35
PF02362.24	B3	127	228	3.20E-23
PF02309.19	AUX_IAA	763	857	1.40E-08

Gene family

Gene family	Subfamily
Transcription Factors Family	B3
Transcription Factors Family	B3-ARF

Gene Ontology

GO term	Description	Category
GO:1990904	ribonucleoprotein complex	Cellular Component
GO:0005840	ribosome	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0009908	flower development	Biological Process
GO:0006412	translation	Biological Process

InterPro

InterPro term	Description
IPR000270	PB1 domain
IPR015300	DNA-binding pseudobarrel domain superfamily
IPR003340	B3 DNA binding domain
IPR010525	Auxin response factor domain
IPR044835	Auxin response factor
IPR033389	AUX/IAA domain

trEMBL

trEMBL term	Description
A0AAN9L8I1	_

SwissProt

SwissProt term	Description
ARFF_ORYSJ	Auxin response factor 6

KEGG

KO	Description	Enzyme
K14486	auxin response factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G30330	auxin response factor 6
Medicago sativa L.	MsG0480022911.01.T01	_
Oryza sativa L.	LOC_Os02g06910.1	auxin response factor 6, putative, expressed
Cucumis sativus L.	Csa021954	_
Glycyrrhiza uralensis Fisch.	Glyur000413s00015469.1	_
Codonopsis lanceolata	Cl_chr01_42880T	_
Arachis hypogaea L.	AH20G05020.2	Auxin response factor 6 like

Expression pattern