Gene detail

Detail information of Am06G005190.1 Annotation

Gene ID	Annotation
Am06G005190.1	heat shock transcription factor A4A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005190.1	mRNA	Chr06	12170465	12171810	-

Sequences

CDS:

>Am06G005190.1
ATGCCTCGATTCCTCACCAAGACTTATGAGATGGTGGAAGATCCTTCAAGTGACGGCATTGTTTCATGGAGCGCCACCAATCAAAGTTTCATTGTTTGGGATCCGATAGAGTTTGCAAGAGATTTGTTGCCTAAATACTTCAAGCATAGTAACTTCTCAAGTTTCATCAGACAACTCAACACTTATGGCTTTAGAAAGGTTGGTCCAGTTCAATGGGAATTCGCAAACGAAAATTTTGTACGAGGTCAACCAGATCTTTTGAAGAACATCTATAGGCGCAAACCTGTCCATAGCCATTCTGGGCAAAATCTCATTGGTCAAGTGGAGCCTCCATTAGCCGAATCAGAGCGACAAAGCTTAAAAGGCGAGATTGAAAAACTTAAACAAGAAAAAGAACAACTTCTTCAGGAATTTCAGAAAAATGAACTAAAGTGGAAAATGCAAGAGATGCATTTTAATTCCTCGAAAGACCGTTTGGAAAAGTTGGAACATAAGCAACAAACTGTGCTTTCTTCTATTTCTCAAGTGCTGCAGAAACCTGAAGCTTCCTTAAATCTCGGGTCACTAATAGAAAACATGGACAAGACACTAGGGTTTCAGGAAAGCGACCACTTTAACAACATTGCTAGCATTACAGATTCTATGGAAACTTCCCAATTGTACTTTAGTAACGATGTTAGCATTGGAGATCCTATGGAAACTTCCCAAATGTTACCAAAAGATAATGCTGGGAGCACTTCTGCTTTCTCATCAAACATGGAGCGGATGGATCTACTTGAGTCATCCATGATGTTTTTGGAGAATGTTGTGCATGATGTTAGCGGAAATTCTGTTCAAAGTCACTCAAACATAGATTTGGTTGAACCTATGAGTTGTGTGAATGGCCCATCTATATCTTGTGTGCAACTAAATGTTGAAGTTCAACCTAAGTCACCAGAAATTAACATGAGTGTTGAGCCAGCTGAACCTGTCATTCATGATCCTGTTTCACCAACAGAACAACTTGAAGGAACAACTATGGCTCCACCTACTAATGACATGTTCTGGGAACAATACTTGAGAGAAACTTTTGGTTGCCACTTATGA

Protein:

Promoter(3k):

>AM06G005190.1
AATATTGTTTTTAAAGAAGAAACTCGGATTCTCTAGTTAATAGCTTTTCTATAAAAATTTCTCAAACATATTCATACACGTTAGATACATTCGAAATCAATATTAACCAACAAGGTTGGTACAAGTGGTAATTGGACTTTAACCCCACACCTAAAGTTCTCGGATTCGAATCTTGAGGGGGAGAACTACATTGGCTGGAAAAACCGGAAATTTGTAGCCGTAGATTAGTCACCGACAAAACCGGTGAAAACTACGCACCTATGATATATAGTAACCAAAAAAAATCGAAATCAACATTAATAACACGAGCAAGGTACGAGACTAGTATAATATAGTTTGATAGTCTTTTGTTTGGAAAAAAACATTTTTATGTTTGATTATCGCCAAAACCTTGTGATTTATAGGTTGATAACAAAAACCAATGTTGACCGCTTTTATTTTTATAATTTTGAGAATCACGTAGCTTTGAATTCTTCACATATACTCGAAGATACCTTGTATATATTGGAGACCACCTCTCTTAAGATCAAAAGTCATTTTTCAAACATATTCTCCTATATTTTTGAATAAAAAGATTTTCATTTTTTTGTGCTTCATAAAAAGTTTTCATTTGAAAATACTCAAAAATAACAAATTTTTATGTGTTTCTTACTTTAAATCACAAAACACAAACAAAAAGAAATGTTTAAAACTGATCCTGTTATTTAAAGTTCTAACATTGAATGCATTTTTATAAGAATGAGAATATATATATAAATACCAATATTATATAATTCTAAATCTACTTTCCAACAACTTAGGCAGAAAATTTGCATATAATAATCCAGTTTTCTAATTTTAAAGTTACATAGTGTGTTTTAGTATATTTTAAAATTTGAAAAAAAAAATTAGGTGTTAAAATATGTGAAGTTCGTTTATCAATAGACGGTGTAGGAAAAAAGAAATTTAATTTGTAAGTTGCAATGCTAAGCAGTATATTTTGGAAAAAATGTGGCTGTTCAAATACGCGAAGTTCAATTCTGTCAATAATCGGGTTACTCAAAAAAAAAAGTGATAAAACATGCAAAGCATGACACTTATCATTGTGTTTTGGGGTACTTCAATGTTTGGAAAAAAATTTAGTTGTTCAATACGCGAACCTCGTTACTTAATAATCGGTTTGCGCAAAAAAGAATTAATCTTGTGATAAAATATGTAAAGCATGATGCTTATTAGTGTGTTTTATGGTACTTCGGTAGGCTTGATCTTCAATAATCAATTTAGGCAAAAAAATAAATTTCGTAACAAAATATGTAAAGCGCGGCGCTAAACAATGTGTTTTGGTGTACTTTAGAATTTGTAAAAAATTAGCTGACCAAATACTCGAAGTTCGATCATGAATAACTAGGTTATGTAAAAAAATGTGATAAAATACATAAAGTGTGACAGTAATTACTGGGTTTCTGGGTGCTTTACAGTTTTTTTAAGAAAAATTAGTTGTTCAAATACGCGAAGTTCGATCCTCCATAATCAGTTTACGACAGATTTTGTTTTTTTGTTAATTAGTTTTATTACAATTTTTTTGGCTTAATTAAACCAACAATTGAGCATTGAACTTAGCATATTTTTTTATTAGTATTTGAACTTAGCATATTTGAATTGCTTAAATGTTTACTGATATGTTTTACTAATATTATTTAAACCCCTCTTCTCTCACCAAAAAAAATGTTTTACTAATATTTTTATAATGCTTTCCATAAATAAATATGTTTTTCAATGTACAATTCAAAAAGTATACGTTGTAGAAATAAAGTATACGTTAAGAAATAAAATATATAGAACTATAACAAATACAAATAATAAAGAAAAAATTACAATGTATCATTCATAAAAATAAAAATAAAAAATAACGCGTCTAATTGTTTTATTAGGAAAAGTATTTGGGGAAATAATTTATTTTCAATTCGTTCTCATTTACTAATATATTAAAAGTAGTTACTTAATATCTTTCTATAAAATTTATTTCCTAAAAACATTTTTGCACACAAGAATTGTTTGTTATTATATATGGGAAACAATTGCTTATTGAAAAAAAAATATATAGGGGAAACAATTATTATTACTTGTTCAGCAAGTTGATCGATTAAAAAAATACTCCATTTTATTTGGAAAAAAAAATTGGATTTAATTTATAAACACAATAAGTGTATAAGTGTTTTACACTATCTACCAATTACAGGTTGACATGTTATTAAAAAAATTTAGTCAATTGGTAACCACCTTATATGTCAACCGTTCCATGAATTGTTATTGGTTGTGGTTGTAAAAGTCTATACACTGTATGCGTAAATAAATTAAATTCAAACAAATATGTACTAACTTGTATGCGTAACCACACTGTTTGAAAAACTAGCCAGAATCCTTTGATCATTTGAAAAATATGTACTAACTTGGTATATTTTGAAGATGAAGCTGCCAATTTTTTCTGGTTAAATATGTTTTTGATCCTTATAAATTTGAAAATTTTGTTTTTAGTCTTTATAATAAATTTTACTCACTTCTAGTCTTCAAATTTTCCTCCGTCAATGTGAAATTTTTATAAGGATTAATTGTTTTTGTTTCAAATTTTATAGTGATCAAAAACATATTTAACCCATTTTTTCTGCGGGTGTGTAATATTGGTTCCGGTTTCACCTTTGTTGTTTGTGTTTGAGCATTTAAATCTACAAAAAGTTTTACCTTTTTTGTTGTAATTCATCTATAGCAGGTGCAGTGAAGGTAAATTTGTTTTCGGGAATTATTGATTGGCATTAGCTTGGATTGACACAACTTAGCTAGAATGGGAAAAAGGTAGAAAAAGGAAGATTTTTCATTGTTAGAGATTTGAGAAGAATTTTTGTGAGATATACGGCTCAGTAAGTAATCTATATAATAAGGGTTTTTGATTTGAGGATTCATTCACTTTGTTTTGAGATTTGTGTTTTAGGTTGGAGGAAGCTTAGTGCAGTTCAAGTTCCAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00447.20	HSF_DNA-bind	4	93	4.80E-32

Gene family

Gene family	Subfamily
Transcription Factors Family	HSF

Gene Ontology

GO term	Description	Category
GO:0034605	cellular response to heat	Biological Process
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0003700	DNA-binding transcription factor activity	Molecular Function

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR027725	Heat shock transcription factor family
IPR000232	Heat shock factor (HSF)-type, DNA-binding

trEMBL

trEMBL term	Description
R9R6C4	_

SwissProt

SwissProt term	Description
HFA4A_ARATH	Heat stress transcription factor A-4a

KEGG

KO	Description	Enzyme
K09419	heat shock transcription factor, other eukaryote

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18880	heat shock transcription factor A4A
Medicago sativa L.	MsG0680032449.01.T01	_
Oryza sativa L.	LOC_Os01g54550.1	HSF-type DNA-binding domain containing protein, expressed
Cucumis sativus L.	Csa017341	_
Glycyrrhiza uralensis Fisch.	Glyur001131s00029302.1	_
Codonopsis lanceolata	Cl_chr03_07160T	_
Arachis hypogaea L.	AH10G01050.1	Heat stress transcription factor A-4a like

Expression pattern