Gene detail

Detail information of Am06G005140.1 Annotation

Gene ID	Annotation
Am06G005140.1	AAA-type ATPase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005140.1	mRNA	Chr06	12032092	12038863	+

Sequences

CDS:

>Am06G005140.1
ATGACTAGGGCTATTAGAAATAGGGTACTTAAGGATGCAAATGGTGTTGATATTACTGATCATTTACGCAACCACATCCATTTAACTAATTGTATTCACTTGAAAAACCATATGCACAAGAATAGCCCCATAATGGCTGATAGGTCCATTATGAGGGACCTTGTTGTTCTTCAGAGATCACGTTCTCTCAGGGACCCTTCTGCTAGTCCTCCTTCATGGCACTCACCTTCTGTAGTTGATTTGCTTTTCAAAAGAGCTGAAAATGATATCATGTCTCAAGGGGGAAGAAGGTCTGTATGTGTTGACCGGAGGAAGGAAGGTAGGAGATTGTCTGGAACCTCACCTGTGAGTAAAGGTACATCAGGAGTTACTCCAGGTCAGGCCAGTAGGGGTAATGATGGGGTGCCGGTAGCGGTGGCTAGTGAACGAAGTAGTAGGAGCGGTGTCGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAGTAATAGGCCTGATTATTTGGAAGTTAGTCAAGAGCAAGCTTTCAATGAGACTGGCAAAAGTTTGGCTGAAGATGTTATATCAAGACATTCTGAATCTAAAGAGAAAAGGAGTAGCAAAACGAGGGGGAAGAATGTTCGCAATGTTCAAGTTAAGACTCTTTCTGATCAGCTGAATGATGTTCCTTTGGACAGTGATGATTTAGCTTCGTCGAACATTCATTTTCGTGGGAGGTTTCCAAGACAGGCGAAGATTATTGAGGAGGCAGAAGCCAGCGTGCGCGGCCATGGAAATGGAATGAATAGGGGGAAAAGGCGTAAATTTCGAAGTGCAAGAAGAACTCGGGTTGCTACGGCATCAAGAGATATTGGAGCTGAGAATGAATTATCTGTGGCTTCCAACTCATTTGCTCAGGGTTCTGCTCACCAGAAGTATCACTCGGAGGAGGTTGATGAGTATGTTGATGACAATGTTACCAGGGCTCCAAAAAATGGGTGTGGCATTCCTTTTAATTGGTCCAGAATTCATCATAGCGGTAAAACAATCCTTGACATGGCTGGAAGAAGTTTGTCCTGTGGTTTATCTGACTCAAAGTTAAGGAAAGGGACATTTACTGTCAATGGAAGGCATATTTCCGAGATGCCTGTGGCATCTGACCACTCCAGCTCATGTACTAAATCTGATGCAGAAGCACTGCCTTTGCTAGTTGATGCGTCTGGATCTCATGGAAGCACTGAAAACGCTTGTTGGGGCCATGACTATTCTGGCGAATTAGGTATTTATGGTGATCATTTGTTCAAGCAAGATATCGATTCTGATCTGGCTTCTGAAGCTAGATCTGGTGACCAACATAGGTTGAGAGGGAATCATCATAGTAGACACCAAAGCTTAACACAGAAATATATGCCGCGGACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTACTGAGACGGAAAGTTGGATTGTTGTATGTGTTTTACGGTCCACATGGCACCGGAAAAACTTCGTGTGCTCGCATATTTGCCAGAGCTTTAAATTGCAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTACTGCATAGCACATGATATGGGAAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTCGAGAGCATCATGGACCTACTCGAAAATATGATTGTTTCCCAGCTTCCATCACAGTACAAAGTGTTTATTTTTGATGATTGTGATACTCTTTCAGCTGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAAACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGCCATACCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTAAAGGATGCAGATATTGTACATACCCTACAGTGGATTGCTAACAAAGAAGGTCTAGAAATTGATAAGGATGCCCTGAAACTCATTGCATCAAGATCAGATGGATCATTGAGGGATTCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAAAATATCTGTTCCTCTTGTTCAGGAGCTGGTAGGGCTTATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACAGTGAAGAATTTGAGAATGATCATGGAAACAGGTGTTGAACCATTAGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCGAAAAAGAAAGACGAAGAAGGAAATTCTTCCGGAGACATCCATTGTCAAAAGAAGACATGGAAAAGCTTCGTCAAGCTCTGAAAACTTTATCTGAGGCTGACAAGCAGTTGAGGGTGTCCAATGACAAGCTAACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCATGACACTAAAAAATGGAGGAATGAAAGAAGCTACTAGGTTCTCTGGCAATCCTGTTGAAATTTCTAACAAAACCGGCCGAATGTCAATGGATGCTAGAAGAGATAATCTTCATGCTGGGAGCTCAGCAGATGGTCTCACAAAGGGTCTTAGTTCAGAGAAAAGAAGATATTCCGTGTCTGGTTTTACTCCTCAACATACTTGTTCACATGCCACCGATAAGATTAGGACAAATGAAAGGCAGACTTCGGGTAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGATGCTGGAGAGGATCCATGTTCCTGGTCTCAAAGAGTTTTTGCATAGAGAAGGAAAGCTAATCTTTATTAGCTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAACTCTCAACTTTCCAAATCTACGGCTGAGAAGTTCACTGGCCACATCTTACAAGCATTCGAATCTGTACTTGGATTTTCTGTAACCATAGAAATTAGATGTGAGTCAAATAAAGATGCAAGCTCAGCTCTAGTATTGCCTGCCATCAATGGTAGTTCACCTCAGATTAGGGACTTAAATGATGTTGGCACTGAAGCTCGTCCTTCAATAACCGGTTCTGTTGAAAAGAAAATGGGTGAAATTGTAGAAGAAGAAGCTTCTCATGTGGAACCCAAGAATAATGAGCAGAAGGTTGATGCTCGGGCAACATATAGAAGTTTAGAAGGTACAAATATAGGACAAGCATTAGCTTCCCATAAAACCCCGATTGTTATATCGCATTTAGACCGAAGAAAGCTTAGGGAGCAAGGTCAAAGTCAAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGTCAACGAAGTGGGTGGTCTAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGTTTACTGTGCTGGAAAGCATCAAGAGCAACTCGTCGGAAGCTGTCACGCTTGAAAATCCGAACCCGAAAACCACGAGCATTGCTGAACCTTGTCTCATGTGGGAAATGTCTCAGCACAAAATCTCCGAGGTAG

Protein:

>Am06G005140.1
MTRAIRNRVLKDANGVDITDHLRNHIHLTNCIHLKNHMHKNSPIMADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRAENDIMSQGGRRSVCVDRRKEGRRLSGTSPVSKGTSGVTPGQASRGNDGVPVAVASERSSRSGVGDGRRVGREESGRKSNRPDYLEVSQEQAFNETGKSLAEDVISRHSESKEKRSSKTRGKNVRNVQVKTLSDQLNDVPLDSDDLASSNIHFRGRFPRQAKIIEEAEASVRGHGNGMNRGKRRKFRSARRTRVATASRDIGAENELSVASNSFAQGSAHQKYHSEEVDEYVDDNVTRAPKNGCGIPFNWSRIHHSGKTILDMAGRSLSCGLSDSKLRKGTFTVNGRHISEMPVASDHSSSCTKSDAEALPLLVDASGSHGSTENACWGHDYSGELGIYGDHLFKQDIDSDLASEARSGDQHRLRGNHHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVLRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFESIMDLLENMIVSQLPSQYKVFIFDDCDTLSADCWNAISKVIDRAPKRVVFILVSTSLDAIPHIIISRCQKFFFPKLKDADIVHTLQWIANKEGLEIDKDALKLIASRSDGSLRDSEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRMIMETGVEPLALMSQLATVITDILAGTYDFEKERRRRKFFRRHPLSKEDMEKLRQALKTLSEADKQLRVSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPMTLKNGGMKEATRFSGNPVEISNKTGRMSMDARRDNLHAGSSADGLTKGLSSEKRRYSVSGFTPQHTCSHATDKIRTNERQTSGKNRKEIEEIWLEMLERIHVPGLKEFLHREGKLIFISFGAAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGFSVTIEIRCESNKDASSALVLPAINGSSPQIRDLNDVGTEARPSITGSVEKKMGEIVEEEASHVEPKNNEQKVDARATYRSLEGTNIGQALASHKTPIVISHLDRRKLREQGQSQSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRTRKPRALLNLVSCGKCLSTKSPR*

Promoter(3k):

>AM06G005140.1
ATAGAATAAGAATCTCATCAAATTAAGAATATTTAAAGTCATTTTTGGGTACACTACAAGAATAACGCGTTTTACCAGCATACAATTTTTGGCTATTAGGGCCCGCCAGTAGCATTTTTGGCAATTTTACCGGCGGAATCTATTTGTTTGTTTTTACATTACCGGCGGCCAAAAACCGCGATTTTGATTTTTTTTACTTTACCGGCACGGGTAATGATTCCAACGGTTTTTGGCGTTTTACCGGCAATTTAATGTGTATTTATCGTAAAAATGTAACTTTTGCCTTTATTTATTCTTAGAGTCTCTTATGTTTTCTACCAACAATGGTTGGTCCGAGTAGCAACTGGGCTCATATCCCACTCTAAGATCTCGGATTCAAATATTGGGTATAACAAAAACTCTATTAGGAGGAGAGAACTACATCGACAAAACAAGTCTATTATGTTTTCTATGAGTTATTATGAGATAGTGATAATTTTTTTTTTTGACAATAATGAGATAGTGATAATAAAATGCTTAATATGGATATATATATATATATATATATATATATATATATGACCAGAGGCAGATTCAGGGGGTGTTCCCCATGTTCCCGGGAGCACCCCAAATATCCTGTCTTTGTGGTAATACACCCCAAATATCCTACTTTGGTAGTAATACATCCTGCCTTAGTGTCATTAAAAGAACACCCTATTTACTCCTGAAAAAAAAAAAGAATACCCTATTCTAAAATCCTGGATCTGCCCCTGTATAGAACCCCATTTAAAAATTATAGTAGTAAATATATTCCTCAGTTTTGATGTTTGTTGATTTTTTTTCTCATAAAACAGACTGGAGTTTTAATTTTTTCATTTTGCACAAACTTTTATAATAGAATAATAGAATGTCGTCAAAAGAAAACAAATCGTCTCCTAAAATATTGATTTTCACCCCATAACTATTTTTTAAATCGGATATCCTTTGCGCACAACTGCATAGACTAATTTCTCGAGCCGGGTAGGATCACAATGGGCGGCAAAGCTTTCCGTCAATAGATTGCGCAACTGCAGAGACTAATCCCTCGAGCCGGGTGGGACCACAGTGAGCGACAAAGTTCTCCCTCAAAAGATTTAACAATGCTGCATGCCCAAGACTGGATTCAAACCTAGGACATTGGTTAAGCTGGAAAAAACTCTTACCATATCATCCAAGTGCTCTTGGGTTTTCACCCCATAACTCTATCTTAGTCAAAAAGAATTTCTATCCAAACTTGGTAAAAATTAAATAATGTGACAATATCGTGACATAATATTTCTTTTTTTAGATCTCATTTATATTAGTAATTACTATATTTTTTTGGTGTGATATTAGTAATTAGTAATTGGTAACAAATACGGTTGGTTCAATGGCTTAATTTACCTAGGATAGGAGGTCAAATCGGTGCTCCGAGTTCAATTTCCACAGTGGACAAGCTCGTATTGACCGATTCGAAATTTGATTCTAAGCATGAGTGGGGATTAGTATTTTATTGAAAGCGTTGCGACACTCTGTGGATAGCTAGCCAACAATGGCCTGAACAGAAAAAAAGTAATTAGTAATTGGCAACCGATTTAATTTATGTCATTTGGGAACTTTGAATGAGGTCATGATTTTTGTTTATCATTTATCAAATTTTATTTATCATGTTATTGGTGCGTAGTATCTATCGAAAAGTCAATGACTAATCTATGGAGATCCTAACTGACCACGTGTATATCGATTTTGCCGGTCCGTGTAATTCTCTCATCTCAACAGAGTTTTTGCTTAGGAAAAAAGGACCACCATGTAGCCAAAAAAGCACGAGGAAAAAGTACGAATTATAAAACAAACAAAAACATGGAAATCAACGGAACGGGTTTCATTGGCCCCATCCAAATTCAAAATCTGCAAACAACCCAATTATTATTTTCTTTTTAGACGAATAAATAAATAAGCAGTCTAAAATATTTGAGGACCCCGTTTTTTTTTTTTTTTTATGAACAAAATAACAGTTCCTATGTTTGCAATTGCATGCTATTTTGCTTAGGAAATGAATACACCGCTTTATTGGCAGTGTGTCCTCTGTATCCAGAATTGCGTCTGACTCTGTCTGCACCAAGTAACGGATCTTACAATCCCCCCATACCCCCCACCACTCTCTCTCTCTCCCTCTCTCTCTCAACCCCTGTTTCTCTCTCTAACTAGCCATGGATATTGACTAGCACAGCAGTGACAGCACCACTCACTTCACTACTATCGCTTTCTTTCCAAAGAACTCCTCTCGTGAAGTGCATGTGAAGCTTGTTTCTTTCAGAGATCTGCTGCTTAATTATCCAAACGGGTCACTAACCTTTCTTTTCCACCTCATTCAGGTGATTCAACTCTTTTCCTTCTACCTTTTTTAATTTCTCTCTCTCACGCACATCATGTTCTTTTTGCCTCTGCTTCATTAACTAACTCCCTCTCATTTTGTCAAACAGTGTAGCACTACTTCCATTGAGATAATTAATGGGGTCTTCGTTTCTTCTCTTCTCATTGCTTCCCTAGCCTCAAAATTGAACCTTTCTTGTGGGGTACCACCACTCTAGCTTGGTCCACAAAGTTCGTTTCTTTTGGACTTTTTGTTGGTCCAATGGGTTTAGCTAACTTTTGGGTTTGGTTTACTGAGTGTCTGGTTGCAAGTTTTGCTGTTTCTTCTTGAAGGGTATTTTATTGTTGGGTGGTGATTTTCACTCAGTGATGGGATAATTGACCATGAGAGTCGCTATTCCCCTTTTGGTGAGTTTTGAATTTTTAGCCTTTTCTTTTTTGGCGTTTATGAGTAATTAATGGCTGTTCTGGATTCAGCATTTTCTTTTCTGCCTTTTTTATTTTTGTTGCCATAATTGTGAAAATAAATTGGCACAGTTACTGGCACAAAATGAGATACTTTCTGATTTGTTTCCTTAATTTAGAAGATATTCTGCTGTTGCAGTCAAAACAAGGGTTGGTTTTCTGATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13177.9	DNA_pol3_delta2	475	632	3.40E-26
PF00004.32	AAA	496	629	4.10E-08

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0046872	metal ion binding	Molecular Function
GO:0004842	ubiquitin-protein transferase activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR045085	DNA polymerase III, subunit gamma/tau, helical lid domain
IPR012763	DNA polymerase III, subunit gamma/ tau, N-terminal
IPR022754	DNA polymerase III, gamma subunit, domain III
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0AAN9JYZ6	_

SwissProt

SwissProt term	Description
STIL3_ARATH	Protein STICHEL-like 3

KEGG

KO	Description	Enzyme
K02343	DNA polymerase III subunit gamma/tau	[EC: 2.7.7.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18820	AAA-type ATPase family protein
Medicago sativa L.	MsG0280006934.01.T01	_
Oryza sativa L.	LOC_Os01g53070.1	ATP binding protein, putative, expressed
Cucumis sativus L.	Csa000673	_
Glycyrrhiza uralensis Fisch.	Glyur001780s00035661.2	_
Codonopsis lanceolata	Cl_chr03_07090T	_
Arachis hypogaea L.	AH10G01100.3	Protein STICHEL-like 3 like

Expression pattern