Gene detail

Detail information of Am06G005060.1 Annotation

Gene ID	Annotation
Am06G005060.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005060.1	mRNA	Chr06	11858277	11864138	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM06G005060.1
AAGAGTGAACTGGGTTCACAATTACACTAGGGAAGTCAATTCACGATGAGCATTTTAAAAATCAAACAATTGTTAATTGAATTTACGAGAGTAATAAGAATGAAATGAATTCATTGATGCCGGTGAACTCAATTTATGATGGAAATTTTTAAAAGAAAACAATTATAAATTGAGTTCACTAGTGTGATCGTGTACTTAGTTCACTTCTACCCTCGTGTAGAGTTGACTAGTGTAAGAGTGAATAGAGTTCACATGTACACTAATGAACTCAGTGCACGGGCAATACAAAAAACACATAAAAGAATTAAGAAAAGCCTTAACAGTGAAAACATTTACTCACCTCTCCCCCTATATATATATATTGATGATTTTCTTTAACCTAACGTGAAAATTTCAGCTATGGACACCCCTTGTGTAGAGCTGTTCATGGTTTGGTTCAGATGGAGAATCGAACCGAACCAAATCGAACTGGCTAAAACAGTTCTTCAAACTGAACCAAACTGTTATAATGGTTCCATGAACTGAACCGGACCGTATTAATGGTTCAGTTCAGCAGTTCTTGTCTGAACCGAACTGGTTTGAAAATGTTTTAACTGTTTTAAAGTGTGAACTGTTTTGTCCGTAATACTAGCAACCGAACTGATATTTACCAAAAAGAGAACTGTTATTATTTTGAGTTGGAGAACTTTATTATCTCAAAATGAAAAAAATAGATTAATTGGACACGTCACTTTCGATCTTTCACATATGGTGACACAGTCTTTGTGTTTTCTTTATTTGCTATTTACTATTATTATTATTTTTATTATTTAAGGTTCTCGAGTTTTATTTCTTAACATATGTCATAGACAGATGTACTGTTATTTAAATATAGTAATACTTTTAATTTTAAATACAGTAAATTAGTAATAGTAAAACTTATAGTATTAAAATTAGGGGTGTCAAAATGGTCTATTTGTCCACCGGATATCCGGTCCATCCATAGCAAAATCCATCCAATCCATCCATTACAAAAAAAAAAATATTAATGGATTGGATTGAATCCATCCGTTTGATTTTGTGGATGGTTGTGATCCATCCATCATATTTTCTAAATCCATTGGATTACAATAACTACAAAATCAGAATCCATTAAATAATTAATTTTTTTTAACAAATCCATTGCATAATTATAAAAATACATTTTTTACCAAAAAAATTTTTTTAAATAGCTTTTTTTCCAGAAACTTTTTTTAAAAAAATTCATTCTAAAAAAAAAATTTTTTGACCAAAAGTCATTTCAAGATTAATATAATATATATATATATAATATATATATAATATAACCACCGGAGGGCCACCGCGACCCACCTCCGACCACCGTCCGCCGCTGCCGGAACCACCACCGGCCACCGGAGCGCTGCCACCGGAACCACCGCCGGCCACCGGAGGTCCGCCGCCGTGCCGGTTGCCGGAGCTCCGCCGTCGGCCTCCGCGCCGGCCGCCGGAGCTCCGCCGTCGGCCGCCCCCACCACCACATATATAAATACATATTTATATATTATATTATATATATATTAATAATATTATATATACATATATACATATAGTTAAATACATATTTATATATACATATAGTTAAATACATATTTATATATACATATAGTTATATATATATATATATATATATACATATAGTTAAATACATATTTATATATTATATTATATATATATTAATAATATTATATATACATATAGTTATATATATATATTTATAAATCTAAAAAATTCAATTTTGTCAAAAAATGATAATAAATTCAATTTCTACAAAAAAAAATATTAAAATTTTTTTGACTCAAAAGAATTTTTTATCAAAAGATTTGTTTATATTTTAAATATATTAGTGGATGGATTGGATATCCATCCATAAAAAAATTGCAAATGGATGGATTGGATGAATTTTTTTGTAAACGGATGGATTGGATTGGATTTTTTTGACACAATTTTAATGGATATAAATAGATAAATGGATTGTCTTCAATCCATCCATTATAATCCAAATCCAAATCCATCCGATCCATCCATTTTGACACCCCTAATTAAAATATATCCAGCTCCATTATCAGAGTTGTACATTACTAGTATTAAAAAAGAATATAATTTTCAGAGGTATGATGGGACGTAGGAAATAGAATTTGTGTAAAGAATTGAAGTAAAGGTAATTGTCAGAAAATGTTTCAATTCTCGGTCTGCGATTTATTGGATGAAGAAAGTCTCCGAGATTGGGCTCATGAATTACCCATTCGGTTCACTAGAGTTCCCTAACTATAACTACTATAAGGTTCGGTTACTAAACTGTCTTTTAATTTTCAGTTCAATTTGCAAACTGTAAGCAACAGTTTGGTTCATTAACAGTTAGTTCAGTTCAGTTCACTGGTTCGGTTCAACAAACTGGTTATTTTGAACAGCCCTACTTGTGAGAGAGTAAGAGAGAAAAAAGAGGTGTGTGAATATCTAATTAGGAGTAGTTAAGGGTAGTTTGGCCGTTAAAATTGTTATTTTTAAATTTGGGGGGGTGTTGGTAGCCAAAAGGGAGGTGCCGGTAGACTGAGCCATAGAAAATGGGTAATAAAACTGTAAAAAGATTCTCGAATTAGTTCCTCCCAGGTGAAAACGGTGCGTTTGATGTTGGGAATGAGAGAACGCGAGTCAAACTCAGGAAGAAACTTATTGAATTGACTAGCACGGCCACGGCATTCTTCTGGCACCGTCGTCAGCGGCGGTAGACACATCGGAGACCCCGATCTCACTGCGACGGTTGTTCTCACCGTATCATCGTCACCTAGGTTAAGTTCATTCCCTTTTCTTTAGAAACATCGCATAACACTTCTTTTTCGATATTGTTAGTTCAATATCATTGAGATTCAATAAATTCTGATCAAGCGAATCATATTAAATCTTCTATTGATAGATAAATGTTGATTGATTGAAGAAGAAGAAGAAGAAGATTTGTATTATAGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	69	106	2.20E-39
PF00400.35	WD40	250	285	2.20E-39

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0031929	TOR signaling	Biological Process
GO:0016740	transferase activity	Molecular Function
GO:0031932	TORC2 complex	Cellular Component
GO:0032956	regulation of actin cytoskeleton organization	Biological Process
GO:0005768	endosome	Cellular Component

InterPro

InterPro term	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR037588	Target of rapamycin complex subunit LST8
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A4D6KQF5	_

SwissProt

SwissProt term	Description
LST8_ORYSJ	Target of rapamycin complex subunit LST8

KEGG

KO	Description	Enzyme
K08266	target of rapamycin complex subunit LST8

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G18140	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0280006925.01.T01	_
Oryza sativa L.	LOC_Os03g47780.1	WD repeat-containing protein, putative, expressed
Cucumis sativus L.	Csa002454	_
Glycyrrhiza uralensis Fisch.	Glyur000086s00011495.1	_
Codonopsis lanceolata	Cl_chr04_49190T	_
Arachis hypogaea L.	AH10G01290.2	Protein LST8 homolog like

Expression pattern