Gene detail

Detail information of Am06G005020.1 Annotation

Gene ID	Annotation
Am06G005020.1	cellulose synthase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G005020.1	mRNA	Chr06	11833952	11841551	-

Sequences

CDS:

>Am06G005020.1
ATGATGGAATCTGGTGTTAACTTCTGCAACTCTTGTGGTGAACAAGTTGGAGTTGATGCTAATGGAGAGGTTTTTGTGGCTTGTCATGAATGCTATTATCCAATTTGTAAGCCTTGTGTTGATTATGAAATCAGTGAGGGTCGTAGAGTCTGCTTGAGATGTCGCACCCCCTATGCTGATAAAATAAATGGTAATGATGACACCAAAGTTCCTGGAAATCAATCCACAATGCCTGCTCAGCTCAGTATTTCTCAGGATGTTGGACTCCATGCTAGGCATATCAGTACTGTGTCCACAGTGGACAGTGAATTAAATGATGAATCTGGGAATCCTATTTGGAAAAATAGAGTGGAAAGCTGGAAAGAAAAGGATAAAAAGAGCAAGAAGAAAAAGGCAGCACCTAAGGCTGAAACTGAGACTCCAGTTCCACCAGAACAGCAGATGGAAGAAATGCAGTCTCCAGAGGCTGCCGCTGCTGAGCCACTTTCAGTCATTATTCCAGTCTCAAAAGATAAACTAGCGCCATACCGATCCGTGATAATTATACGACTGATAATCTTGGGTCTCTTTTTCCATTATCGAGTTACACATCCTGTTGATAGTGCTTTTGGTTTGTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCTTGGGTGTTAGATCAGTTCCCTAAATGGTCTCCCATCAATAGGGAGACTTTTACTGATAGGCTCTCTGCAAGGTTTGAAAGAGAGGGTGAACCCTCACAGCTAGCTGCTGTGGATTTCTTTGTCAGTACAGTTGATCCATTGAAAGAACCGCCGTTGATCACAGCTAACACGGTGCTTTCTATCCTTGCTGTGGACTATCCTGTGGATAAAGTATCTTGTTATGTATCAGATGATGGTGCTGCAATGCTGTCATTTGAATCTCTCGCGGAGACATCTGAGTTTGCTACAAAATGGGTACCATTTTGCAAAAAGTTTTCAATTGAGCCAAGGGCACCTGAGTTCTACTTCTCTCAGAAAATTGACTACCTTAAGGATAAAGTACAACCTTCTTTTGTTAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTATAAAGTAAGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCTGATGATGGTTGGACTATGCAAGATGGAACCTCTTGGCCCGGAAATAACACACGTGATCATCCCGGTATGATTCAGGTTTTCCTGGGAAACACTGGTGCCCATGACATAGAAGGAAATGAACTTCCTAGGTTGGTGTATGTTTCCAGAGAGAAAAGGCCAGGTTACCAACATCACAAAAAGGCCGGTGCTGAAAATGCATTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTACATTCTCAATCTTGATTGTGATCATTATGTAAACAATAGCAAAGCTGTTCGCGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATGTATGTTATGTGCAGTTCCCTCAAAGATTTGACGGTATTGATCGCAGCGATCGATATGCCAATCGCAACACGGTTTTCTTTGATGTTAACATGAAAGGACTTGATGGCATTCAAGGACCTGTATATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTATAGCCCACCTTCTGTGCCAAAGTTACCAAAATCTTCATCATCATGTTGTTGCTGTCCATCAAAGAAGCCTACCAAAGATGTTTCAGAGCTTTATAGAGATGCAAAGAGGGAAGAGCTTGATGCTGCTATTTTTAATCTAAGGGAGATTGAGAATTATGATGAGTATGAGAGGTCGATGCTGATTTCACAAATGAGCTTTGAAAAAACATTTGGTTTATCAACTGTTTTTATTGAATCTACACTAATGGAGAATGGAGGAGTGCCTGATTCTGCAGATCCCTCAATGCTGATCAAGGAGGCCATTCATGTAATTAGCTGTGGCTATGAAGAGAAGACAGAATGGGGAAAAGAGATTGGTTGGATCTATGGTTCAGTAACCGAAGATATCTTGACCGGATTCAAGATGCAATGCCGAGGATGGAAGTCAATTTACTGTGTCCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAATCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATTTTCCTCAGTAGACATTGTCCCCTTTGGTATGGTTTTGCCGGAGGTCGCCTCAAATTGCTGCAGAGACTGGCTTATATAAACACCATTGTTTACCCCTTTACATCCCTTCCTCTTGTTGCTTATTGTTGTTTGCCTGCAATTTGCTTACTCACAGGAAAATTCATCATACCAACGCTATCAAACCTTGCAAGTATGCTATTTCTAGGACTTTTCCTCTCAATTATAATTACAAGTGTGCTAGAGCTAAGGTGGAGTGGGGTTACCATTGAAGATTTGTGGCGTAATGAGCAGTTTTGGGTGATTGGAGGTGTTTCAGCTCATCTATTTGCTGTCTTCCAAGGATTCCTAAAGATGTTAGCAGGCGTTGATACAAACTTCACAGTCACTTCAAAATCAGCTGATGATGCAGAGTTTGGTGAACTATACATAATCAAATGGACTACACTCTTGATTCCTCCAACAACCCTTATAGTTATTAACATGGTTGGTGTTGTTGCTGGATTTTCTGATGCACTTAATGGTGGATATGAATCTTGGGGACCACTCATTGGAAAAGTTTTCTTTGCTTTCTGGGTTATTTTTCATCTCTATCCATTCCTCAAAGGTCTAATGGGTCGTCAAAACCGTACTCCAACCATTGTTATTCTCTGGTCAGTGTTGCTTGCTTCTGTATTCTCCCTTGTTTGGGTTAAGATCAACCCATTTGTTAGCAGAGTTGACAGCTCAACCATCTCTCAGACTTGTATTTCCATAGATTGTTAA

Protein:

Promoter(3k):

>AM06G005020.1
TGAGAGTGTTTGGGAGGGAGAGTGAGAGATGAAATGTTTTTAATTGAAGGGTATTTTAGGGATTTAGGGGGTTTGGGGGTGTGTGGTGAGTAGGAGGGGGTGTGAGAAAAGTAAAATCCTAATTGTTTTAACCCCGTGTCATAAGCCTATGACATTTCCAGCGCTGTTTTATATGTCCAATTAGACCTATGTCCAACATTTTGGGCTAAAATTTTACTGGTTTTTCTCCAATTAGGCCTATGCCAAACCTTGTGGGCCTGATCTTGTTGGCTTGCCTAATTGGGCTTAGGCGTCCTGTCATGAAGCAGTTTTTCTTAATAAGTAAGCTTATGTTTAATGTTTTGGGTCATGGGCCTACATCTAACTTTTGGGACAATATAAATAAATGGGCCTATATCACGTATTCTGGATACTAATTTAGCCCTTTTGATCCAAAAGCCATAAAAAAATAACAATAAAATAAAATCAGATTAAAAATATTACAATATTAATACATACAAAAAGTCCAAAAAATAAATAAATTTAAAAAAACCAAAAAAATTGAAAACGAAAATACAACAAAAAAAACAGCAGCAAAGCTTGGGCCTCTTCTTGCTGAGTAAGATTTCTCAGCAGGTCCAATACCTGAAAAAGGAAACAAAATCAGGTCAAAATCAAGGATTCATGGCAAAAAACCTTATTGGTGCCTATATAAACAAGCCTGATACACACAGAAAAAGGACACCCAGAAATTCATACAGGGAAATACACGAATATCAGAACCAAAGATTAGGGTTTTATACTAATACCCTAATCACAAAACACCAAAATTTCTGAAACAAAAGAGGAACAGCAGTAGCAGCAAGCAAGGAGAGGAGCAACATTAGTTAACGGCAGCAATAAAACAAAAATTCAGAAGCTGGAAAACAGGTTAGGTTTTTTTAAAAAACATAATTAGGTTTATAAAAAATTTAGATTTGAAAAATCAATATGTAGAAAAGCATGGTTACGAACAACTTCTGTTTTTTTAGAAAAAATAGGGTTCTGTTAATTTGTTTTGAAAAGGAAAATGAAATCAGCAATTTAGCCAGAAATTTGTTTTAAAGAAAGTAGGCAAAGGTTTTAGCTGAAAGTAGGGTTTAGATTTTTGTTTTTTTAAGGAATCAGAAACCAAAATAGGTAAAACAGAAATAAAAAAAAATGAGAGAAGAGACATAAAAAACAAATCAGAACCGAAACTCACCACTTTTAGCTCCGACAACCGTAGACGGTGGTCGTCCTCCCTAATCACGTCGTCACCGTCGGTGAACACCGCCGTAGGGATCGCCGTCGTCTTCTCGCCATTGGCCGTGAACCACCCAGAGAAACAAAAAACAAACACAAAGAAAAGGAATCAGAATAGAAGAGTGAAGAGAAAGGAGAAAACATATAAAAAAACAATAGGAACCGAAGCCTTAACTATTAGTTCCGGCAACCGTGAACGGTGGCCGTTCACCACGAACACCCTCATCGTCCCCCTTCGCCGTCGTAACCAGCACCGTCAAACACGAACCAAGCGTTCGATTCCCCACTTTGTCGCCGTAAACAGCATCGTGGACGCTTCTGCAGCCCCCACTGCAATCGTTCGCCTCCGGCGAACCTTCCTTTCGCCGTCGTTACAGTCACCACCGTCGTGACTACCACCGTGATGGCTAGTCAACGCCATCCGCCGTCTCCGTCGCCAACCATCACCTTCGTCGTAACCCTCTCCATCTCATCCTCTCTCTCTCCGCAAATCTCACTCTCTCTCCCCGCAAATCTCACTCTCTCTCCCCGCAAATCTCTCTCTCTCTCTCACCGGAAACATCGCGCCTTCTCTCTTTCCCCATTTTGTTTGTGCGGCGCAGCTGGAGAGGGAAAGGAGGAGGAAAATTAGGTTTAGGTTAAAGTGAAGTGGGTTTTTATATCCCTCGGGTTTTTTTGTTTTATTTTTGTCTTTTTTTATTTCGGTTACTGAATACACCCCTGTATTTCATCACCGTGACCCCCTTTAGAAGCCCACGTTCTCGCAGGCCAGTTCACAAAAACGAACTGGGCTTTTGCTTTCCACACTTCCCTTTTTAAAAATACAAACCCCTGCAGCTAATGACAACCCATTTTACCACTACACCCCTTTTTTGTTCCTTTTTCTTTTTTTCTACAAATAAATAATTTCTTTCACAAATCCATTTTTTCTATGAAAATAGACATTCCTTTTTAAAAAAATATAAATAGGTGACCAAGTCGACCGTACAGTCGGGTTAGTCTGCTTTTTAGGTCACTAATGAACCGTTACGAATCATGTAACATGGGTACTTGAAATCTTTATATTTATTTATTTTTTTCATAAATATTTATAAATTCGAAAATTAAATAAATCTAAAGATACTACATAAAAATATATTAAATTTTAATACATTAAATTCATTCCAATGAAAGAATTTGATGACTTTGAGAAACCAAAATCAGAAACCTTTTGTCAATATTACCAGCTTGGACGGATCAAATTTCCATTCAATTTTCTTCAATGGAAAAGGTTCCACCTAACTACTAATATTTATTTTATTTTTTGAAATATATAATCTTTGATTGCACTTGCAGGGTGTTGGTCAGTGGTCATGAGCTTGTAGTTGAAGCGTTGTTAGTTAAAGACGTATGCAGTCCAACCAAATCCTTCCTTATACTTCCCGCAATAAATTCACATGAAAAAAGAAACAAAGAAAACACACGTTGCTTCTGATCTCCCACTGCATCATCTGAATATGCAACAGTGACTTTGTGTGTGAGCTAAACAATGTTTGACACCAACCCCTTAACCTCTGAAAATGAAACCAACTCCAACTCCACCATCACCTTCACCACCCTCCACATCCTTTTTACACCTATACAATACAATATTTCAATGACTATATGCTCTTTCATATAAATCCATCATAGCATAGATTGAGAAGCAACATTTTATTTTGGTCCGTCAACATAAGGTGGACTAACTAAAAACCAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03552.17	Cellulose_synt	256	967	0
PF14569.9	zf-UDP	6	60	5.00E-16
PF13632.9	Glyco_trans_2_3	665	764	7.30E-07

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT2

Gene Ontology

GO term	Description	Category
GO:0071555	cell wall organization	Biological Process
GO:0051536	iron-sulfur cluster binding	Molecular Function
GO:0009834	plant-type secondary cell wall biogenesis	Biological Process
GO:0090376	seed trichome differentiation	Biological Process
GO:0006011	UDP-glucose metabolic process	Biological Process

InterPro

InterPro term	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR029044	Nucleotide-diphospho-sugar transferases
IPR027934	Cellulose synthase, RING-type zinc finger
IPR005150	Cellulose synthase

trEMBL

trEMBL term	Description
A0A2K3NRU9	_

SwissProt

SwissProt term	Description
CESA8_ARATH	Cellulose synthase A catalytic subunit 8 [UDP-forming]

KEGG

KO	Description	Enzyme
K10999	cellulose synthase A	[EC: 2.4.1.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18780	cellulose synthase family protein
Medicago sativa L.	MsG0280006922.01.T01	_
Oryza sativa L.	LOC_Os01g54620.1	CESA4 - cellulose synthase, expressed
Cucumis sativus L.	Csa020977	_
Glycyrrhiza uralensis Fisch.	Glyur000086s00011502.1	_
Codonopsis lanceolata	Cl_chr03_06780T	_
Arachis hypogaea L.	AH20G04020.1	Cellulose synthase A catalytic subunit 8 [UDP-forming] like

Expression pattern