Gene detail

Detail information of Am06G004740.1 Annotation

Gene ID	Annotation
Am06G004740.1	regulatory particle triple-A ATPase 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G004740.1	mRNA	Chr06	11107352	11108598	-

Sequences

CDS:

>Am06G004740.1
ATGGATTCAAGTTCAACACTCATTCAAGCGATGACGGAACCGCCACCGTTCCTCCCGTCGGCCAAATCTGAATACCTCCATGGCGGCGACTCTTCCTCTGATGAAGATGACCTTTACAGCCGCCTCAAGTCGCTGCAGCGCCAATTGGAGTTCATTGACATATCCAAGAGGAAGGTTAAGAGGATCCAATCGGTTCCACTTGACATTGGTCAGTTCATGGAGATGGTCGATACGAACAACGGGATCGTCGGATCAACCACCGGATCCAACTACTACGTTTGGATCCTCAATACAATCAACCGCGAGCTGCTCAAACCTAGCGCCTCCGTGGCTCTTCGCCGCCACTCCAACGCACTAGTGGATGTTCTCCCGCCTGAGGCCGACTCTAGCATCTCACTCCTGAGTCAGTCTGAGAAGCCTGATAAGCAGGAAATCCGTGAGGCTGTTGAGCTGCCACTTACTCATCATGAGTTATACAAACAAATTGGTATTGATCCTCCTCGTGCTGTTACTAATCATACAACAGCTGCCTTTATTAGAGTTGTGGGATCTGAGTTTGTGCAAAAGTACCTTGGTGAGGGTCCAAGAATGGTTCGGGATGTATTTCGTCTTGCAAAAGAAAATGCTCCTGCAATTATATTTATTGATGAGGTTGATGCAATAGCCACCGCTAGATTTGATGCCCAAACTGGTGATGATAGAGAAGTACAACGTATCCTCGTGGAACTTTTGAATCAGATGGATGGTTTTGATCAAACAGTCAATGTCATAATGGCAACTAATCGGGCAGACACTTTGGATCCCGCCCTCTTGCGTCCTGGAAGACTTGATCGCAAAATTGAGTTCCCTTTGCCTGATAGGCGCCAAAAGAGGCTTGTATTTCAGGTTTGCACAGCCAAAATGAACTTGAGTGATGAGGTGGACCTGGAGGATTATGTTTCCCGTCCTGACAAAATTAGTGCTGCTGAGATATCAGCTATCTGTCAAGAAGCAGGAATGCATGCAGTTCGGAAGAATAGATATATCATCTTGCCGAAGGACTTCGAGAAGGGTTATAGGACAAAAGTGAAGAAGCCTGATACTGATTTTGAATTTTACAAGTGA

Protein:

Promoter(3k):

>AM06G004740.1
CAATCTGTTCCTTCTTGGCTTAATCTTCAAGTTAAGATCTCTAAACGATTCCAACAATGTCATCTCATGAATCATCAATTCTGCCGTGTGAATAGATTTCCTACTCAAAGCATCAGCTACTACATTAGCCTTCCCTGGATGGTACTTAAATTCAAAATCATAATCTTTCAGAAACTCTACCCGTCTTCTCTGTCTGTTGTTCAGCTCCTTTTGATCAAACAGATACTTAAGGCTCTTGTGATCACTAAAGACTTTGAAACGAGACCCATACAGGTAATGTCTCCAAATCTTTAGGGCAAACACAATCGCCGCCAACTCTAAATCATGAGTTGGGTAATTCTCTTCATGTGACTTCAACTGTCTGGAGGCATAAGCAACTACTTGTTGATTCTGCATAAGGACACATCCTAAACCCTTACCAGAGGCATCACAGTAAATTTGAAATCCCATAGACGGATCTGGAAGAATTAGAATGGGTGTAGAAGTCAAACGATTCTTCAATTCTGCGAAATATCCATCACAGGCAGAGTCCCATGCAAATGGTTGACCCTTGCGAGTTAACCGAGTGAGTGGGAGAACTAGCTGAGAAAATCCTTGAATGAATCTCCGATAATACCCAGCTAATCCCAAGAAACTTCTTACCTCAGCGACTGTCGATGGCTGTCCCCAGTCTACCACAGCTTCAATCTTACTGGGGTCCACTGCGACACCAGCTTGAGATATCACATGGCCCAGAAATTTAACTTCAGGCATCCAGAAATCACACTTGGATGATTTGGCATACAACTTCTTCTCTCGGAGTACGTTCAGAACAATTCGGAGATGTTGCACATGCTCCTCGATCGTCTTTGAGTAGACCAAGATATAATCAATAAATACTACAACAAACTGATCTAGATAAGGATTGAAAATCCGATTCATGTAATCCATGAACACCGCTGGAGCGTTGGTTAGACCGAAGGGCATCACTACAAATTCGTAATGTCCATACCTAGTACGGAAAGCGGTCTTCAAAATATCCAAAGCTCTAACTCTGATTTGATGATAGTCTGACCTTAGATCAATTTTAGAAAATATTGAAGCTCCTCGCAATTGGTCTAGCAAATCATCAATCATTGGCAGAGGATATTTGTTCTTGATAGTTACCTTGTTCAACTGACGGTAATCGATGCATAATCTCATGCTTCCATCCTTCTTCTTGACGAGCAATACAGGAGCACCCCATGGCGAGGCACTCGGTCGGATAAATTGTTTTGAAATCAACTCTGCTAGTTGGGTTTTCAACTCTTTCAACTCTAAAGGAGACATCCTATAAGGAGCTATAGAAATTGGCCATGTGCCCGGAACCAATTCTATAGAGAACTCCGCCTCACGATCCGGAGGTAACGAAGAAACTTCACCGGGAAATACATCTAGGAAATCGTTAACAACTTGTACAGAAGATAGATCTAAACATGTTTCCACCGATGCAGACAACATCATGACATAAGCTTCCGCTCCTTGGAATAGACAATGACTTGCAGAAGTGAATGAAATGACTGCTTCGAAATTGACCGGTTGTAGCTCCACTGATTCGGAGGCGAAACCGATAGTCCGATGAAAGCAATCAAGAGTTACATGGTTGGAAGACATCCAACTCATACCTAGGACAATGTCCATACCCTTCATTGGTAAACAAATAAAGTCCACCACAAAATTTGTCTCCGACTCTTTTCTCTTCTTTTCTGGACATTCATGAATATAGTGGCCCTCCTTCCTGCAGTAGAAACACTGCTTGGAACCCAAACGACATTCACCCTGGTGGGGCTTCCCGCACGTAGAACACTTGTTGAATCTTGAGGAATCAGACGACTGCACTTGTTTCCCTTTGTTTTAGTTGTGCTTGGGACCCATTTGAGGATTAGATGATCCAGCATTTTTCCTATTTTGGCTATACGCCTTTCGGCTTGCATACAATCTCTTCAAGTCATTCTCGGCAATATGACACTACCAAAATAGCGGCCGTTTGCCACACTAATTTAGGCACAATTAATTTACATGTGGCTAAAAATTAGGTTAGCCATGCTACTCCCGTGGCTAAATAACCGGGAAGTTTAGAAAAACATTTCATTCTCCCTCTTAATCACTCGCTGAATTCTGATAACTCGTCCCTTCCACTTCGTCCCACTCCCTTCCACTTCGTCCCTTCCACTCCGATCGCAACTAGCGACCCGTTCCTCCGTTCCCCTCCACACCAGTTCGTCCCTTTCTTTGGTCAGTAACTCTCATCAGTTCCTCTCAAGGGGAAAGCTTTCTTTCGTCAGTTCCTCTCTCAAGGTGAAAGATCGATTTCTCTATTTTTCTTTAATCTCGATAATCGTTGATCATGTATTTTCCTTCTTTCTCGATGTTTTCCTCTTTCTTGACCAGAACGAAGTGAAGAAGTGAATCGACGAAACCTAGCCTCCAATCGTGAAGAAGTGAATCGACGAAACCTAGCCTCCAATCGTGAAGAAGTGAATCGATCAGTGCCACTTCTGTGAAAGCTCCATGAAAGCTCTCTCCCTTGGTCCCTTCGTTCCTTTCGGTGAAAAAGCTCTCTCTCTTGCGACTTCCTCAAGTGAAAGCTCTCTCGTCAGTTTCTCATCGTAAGTCAGTTCCTCATCATCGATTAGTTCTTTTATTTGTTTCTTTATGTTTTCCTTTCTTCTTATTGATTTTGACGTTTTCTTGTTCACTGCATTCATAGTTACAAGGGCAGTTTTTTTCTTCTTACTAAGCGTCTTGTTCGCTTGCGGCGATTTCATCGATCTCAGTTGCAAGTTCTCGTCAAGGTCTATTTCAAACGCGGCAATTTCATCGATCTCTCGGATTACGAGTGTCGAGGTTTGGCTCTTTCATGTTCCAATTCCCACTTCTTTTGATTCTGATTCTGAAATTAAAATTTATGGTTGTGCTTTGTTTACATGTTGAATGCCGATCCATTTGATTTTTGTTGCTTTTAATTTCAATTAGAAAGAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00004.32	AAA	168	284	1.10E-30
PF16450.8	Prot_ATP_ID_OB	69	124	1.70E-10
PF17862.4	AAA_lid_3	307	349	5.00E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process
GO:0016853	isomerase activity	Molecular Function

InterPro

InterPro term	Description
IPR032501	Proteasomal ATPase OB C-terminal domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR012340	Nucleic acid-binding, OB-fold
IPR003959	ATPase, AAA-type, core
IPR003960	ATPase, AAA-type, conserved site
IPR041569	AAA ATPase, AAA+ lid domain

trEMBL

trEMBL term	Description
A0A9D4WV34	_

SwissProt

SwissProt term	Description
PRS6B_HELAN	26S proteasome regulatory subunit 6B homolog

KEGG

KO	Description	Enzyme
K03063	26S proteasome regulatory subunit T3

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G58290	regulatory particle triple-A ATPase 3
Medicago sativa L.	MsG0380015066.01.T01	_
Oryza sativa L.	LOC_Os02g21970.1	26S protease regulatory subunit 6B, putative, expressed
Cucumis sativus L.	Csa007653	_
Glycyrrhiza uralensis Fisch.	Glyur000647s00023067.1	_
Codonopsis lanceolata	Cl_chr06_31460T	_
Arachis hypogaea L.	AH11G13410.1	26S protease regulatory subunit 6B homolog like

Expression pattern