Gene detail

Detail information of Am06G004520.1 Annotation

Gene ID	Annotation
Am06G004520.1	beta-1,4-N-acetylglucosaminyltransferase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G004520.1	mRNA	Chr06	10543769	10545888	+

Sequences

CDS:

>Am06G004520.1
ATGCGCACAGCACTAGCGAAAAGCAAAACAAGATGCGCACAGCAAACACAAGAGGAATCAATTCAAGTATCCAACATGTCAAAAATTCGATGGATTTTGCGTGTGTTGGATATAAAAACCTACACATTCTTGTTTCTAATTGTCCCAATGAGCATATTTGGAATATACGTACATGGACAAAAAATCACTTACTTTCTACGACCATTATGGGAAAAACCACCAAAACCTTTTCATGTTATCCCACATTACTACAGCAACAATGTTACAATGGAAAAGCTTTGTAAACTTCATGGTTGGGGAGTTCGCGATTATCCAAGACGTGTTTATGATGTCGTGTTATTTAACAATGAGCTAGAAATACTAACCCTACGTTGGAAAGAATTATACCCTTACATAACAGAATTTGTTCTCCTAGAATCAAATTCTACATTTACAGGATTTCCCAAGCCTCTAATCTTCAAAAGCAATAAAGAAAGGTTCAAATTTATTGAACCTAGGTTAACTTATGGAACCATTGGTGGAAGATTTAAGAAAGGAGAAAACCCATTTGTCGAAGAAGCATATCAACGTGTAGCATTGGATCAACTTCTTAAGATAGCTGGTATTACTGATGATGATTTATTGATAATGTCTGATGTTGATGAAATACCAAGTGCTCATACTATTAATCTTTTGAGATGGTGTGATGATATACCTTCAATATTGCATTTACAATTGAAGAATTATTTATATTCATTTGAGTTTCGTCTTGATGATAAAAGTTGGAGAGCTTCAATTCATAGATATCAGATTGGTAAAACAAGGTATGCACATTATAGACAATCTGATAATATATTGGCAGATGCAGGTTGGCATTGTAGCTTTTGCTTTCGTCGAATAAGTGATTTTATATTTAAGATGAAAGCTTACAGTCATTATGATAGAGTTAGATTCTCTCACTTTTTGAATCCTGATAGAATTCAGAAAGTAATTTGTCAAGGGGCTAATTTATTTGATATGTTGCCTGAGGAGTATACATTTAAGGAAATCATTGGTAAAATGGGTTCAATACCACATTCTTACTCAGCTGTTCACCTTCCTGCTTTTCTTCTTGACAATGCTGACAAATATAAATTTCTCTTGCCTGGAAATTGTATGAGAGAACGATGA

Protein:

Promoter(3k):

>AM06G004520.1
TGGGTATGGCGCAGCAGCTGGGTTTGGCGCACCACCTGGGCATATAGGCTCATCATCTGGACATATAGGTCCATCAGCTGGGTTATCTATGCCTACACCAGATCCCCAGGATGATATTCAGCATGATGTACATGATGTTGGTGGGGGTAATGTTGATGCTGATTCATCCACTGATGACGAGAGAGTGGAGGTGATTGTTATTAATGGTATCAGACTCAAAGTCATTTATAGCAGTGGTAACGCGTAAGTATTATATTGTTTGTTTTTTTAAAGTTAATTATGCAACGACTTATATATATTTGATAATTGTTTGATATATCTTTCAATATGCAGGCTTCTTCCTGCAAAGGTAGCTTCATCAAACATCACTCATGTCATCCGCAAACGATATTTTCAAACGTTCCATAAAAAGTGGAGCAATGTCGAAGAAGATGAAAGAAATGATCTGCTAGACTTCTTTAGGGTAAGTGTTAATTATTTTGTCATTACTTATATTGTTTGTTTAAATTTTATGTTTAATAACGTTTAATATAATACAGACCAGAGTAACTTGGGACACAGAAGACGATGACAATGTGCGGAGAATTTTTTTCAGAAGGATGGGCGCTCAAATTTCTGATTTGCTTTATAAGCTCCGCTGTAAAGATAAGAAGCCTTCCTACATGAGTGATGAGATTTGGAATGCCTTCAAGAGCCATTGGGCTTCAGAGGCTTTCAAGGACACTGCTGCAAAAGCCAAAAATAATAGAAACTCGGAAAAGGGTGGCTCGCTTCACTGCGGTGGGTCCATCAACCAGGCTCAGCATGCTGCTAGAATGGTAAATTATTTTTCACATCTATGTGTTTTTTATATTATTTAATTAGTTAGCAATTTTTAAAAATGTGTTTCATCTTACAGAGTAAGAAGGCAGGACGCCCTATCACTGCTCCTGAGCTGCATAGAGCCACCCATGTGAGGAAAGGCACTGGCGAGTATGTTGATGAGCGCTCCAAGATGACCCAGGTAAATATACATATTGATTTGTATTATATAATGTTCATTTGTCAAAATGGAGCGCTAATTTGTGGTTATTCAAAACAGGAGCAAATAAATGAGTTCATGACTCAGCTAACTCAGGGGAGCTGGAACCCTGATTCATTTGGCCAACTTACTCCTGAGATGAGAGATCTGGCAAACAAACATTGGGAGAAGACAGTAGGTTGGTCTAAGGGTCGCCTGTATGGTACGGGGCCCATGGCTCCATGTATGAGTCAGTCTGGGGCCGAGAGCAGCAGAAGACGGAGTCGACCAGCTTATACTCCTGCGGAGACAGAGCATATCAGGCGGCTGGAGCAGGAGCTGCACGAGACTCGACAGGAGGTCAGGACCTCCTCTGAGGCGATGAGAAAGATGCAGCAAGATTATGAGAAGGTGACCCGTAGGCAGGAGCTGATGTTTAAGTATTTTAAGAATATGAAGCAAAATGAGCAGCAGCAAGATGAAGAGGAAGATGAGGAGGAAGCTGAGGAGGAAGCTGAGGAGGAAGCTGAGGAGTCTGATGGTGGCAGCTTTTAGTTTTGTTGATTAAATATTTTGTTATAACATTTCAGATTAAGTGTTGTTGATTCAAATATTTTGTTATTGGATAATTTTTATTTTAAACTATTTTATGTATTTTATGTTATTAGATTTTATTATTTATTAATAAAATAAACAGGTATAAAAGCAGATAAAATAAAAAAAAAATTTCATCAGGTTGAGCAGTAGCGTGGGAATTAGCGAGGGGCTTAGCGAGGGAATGTGGCCACGTGGTTGGGCAGTAGCGTGGGCGTTAGCGAGGGAAGGTTGCCACGTAGCTGAGCATTAGCGAGGGAATTAGCGAGGGGGTTAGCGAGGGAACGTGGCCACGTGGCTGAGCATTAGAGAGGGAATTAGCGAGGGAATGTGGCCACGTGGCTGAGCAGTAGCGAGGGACTTAGCGAGGGACCATGGCCACGTGGCTGAGCATTAGCGAGGGATCTAGAGAGGGACACTGCCCTCGCTAATTAGCGAGGGACCCAAATCCCTCGCTAATCGCATTTGCGAGGAGGGAATTAGCGAGGGACGTTGTCCCTCGCTAATTCCCTCGCAAATGACTGTTAGCGAGGGAATTTGGTAATTTAGCGAGGGACTTTGCCGTCGCAAATGACCTTTTTTTTTGTAGTGCACATTTCCTGAGTAGTTGAAAATGATCGCAAATTATTGATCATCTGAGGATCAATAGTACTGAGGATTCAAGAAATAATATGAGCATCTTTGACTTCCCACGCGTCTAAGGCAATTTTATCTTCCGGCGCCTTAGAAAGTCCATCAAAGTGATTCCATAATCCTTTGCCTTTGACATACATCTTGAATTGAAATTCCCAAGTAGCATAATTCTTATCGGTAAAACAAACACAAAAATTATCCATTTCTTTCTCCGAAGCCATTGAAAAATTACTACAAAAATTGATAATGAGAACAACACTTACAAAATCAACAACCAACTTGTAGCAAGCCACAGAGAAACACGCAAATATATCACAGTACCAAGCCAAGATCAAAATACCACTTTTATTGAAACCAACAAGCAACAGGTAACGAAATGAAGCCAATAAGTTTTGAACAATAGCGAATCAATAAAAGTAACGAACAGAAAACGTAAACGAAATCCCAACTGACATTACCAACAACAACTTGCGAATTGGCGCTGAAGCAGAAGAACTAACAGGAAGCAAGCAGCAACAGGGCGCACCAGCGGAAACCACGAACCAATGAGAGCCAGCAAACTAGCGAAATCAGCGAAATCAGCGAACCAGCGAATGCGAACAGCGAACAAGAACCACACGCAGGTGCGACCAGGAACCACGAACAAAAAGAACCAGCCAAATCGCACACGCGAACCCAACAAGAAGCCCAACGGCAACGGACGGCACAAGAAGCCACTCGCGAACGGCAACGAAACCCAAGGAAGGAACAGCAGGCAGCGAATGGCGAAGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04724.16	Glyco_transf_17	36	381	2.10E-180

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT17

Gene Ontology

GO term	Description	Category
GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	Molecular Function
GO:0006487	protein N-linked glycosylation	Biological Process
GO:0016020	membrane	Cellular Component
GO:0006044	N-acetylglucosamine metabolic process	Biological Process

InterPro

InterPro term	Description
IPR006813	Glycosyl transferase, family 17

trEMBL

trEMBL term	Description
A0A072TUB7	_

SwissProt

SwissProt term	Description
MGAT3_RAT	Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

KEGG

KO	Description	Enzyme
K00737	beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	[EC: 2.4.1.144]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G12990	beta-1,4-N-acetylglucosaminyltransferase family protein
Medicago sativa L.	MsG0480023247.01.T01	_
Oryza sativa L.	LOC_Os02g38140.1	glycosyl transferase family 17 protein, putative, expressed
Cucumis sativus L.	Csa011306	_
Glycyrrhiza uralensis Fisch.	Glyur000989s00020269.1	_
Codonopsis lanceolata	Cl_chr01_12840T	_
Arachis hypogaea L.	AH13G47420.1	Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase like

Expression pattern