Gene detail

Detail information of Am06G003950.1 Annotation

Gene ID	Annotation
Am06G003950.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G003950.1	mRNA	Chr06	9220711	9222150	+

Sequences

CDS:

>Am06G003950.1
ATGGGCAGTAAAGCTTTATTTAAATGGCCAAAGCAAATTACGACTTCCTTAGTTGAGCAACTAATAAAAGCAGAAAAGGATATACACAAAGCTGTCCTTCTGTTTGATTCTGCAACAGCTGAGTATAGTAATGGCTTTCGTCATGATCACAAAACTTTTGGTCTCATGATCTCTAAGCTAGTCTCTGTGAACCAATTTAGGTCTGCAGAAGAAATGCTGGAGAGAATGAAGGAAGAAAATTGCAACATTACCGAAGACAATTTTTTAGCTATATGTAGGGGTTATGGACGTGTGCACAAGCCGCTTGATGCTGTCAGGGTTTTCCACAAGATGGAAGATTTTCAGCTTAGGCCAACTCCAAAGTCGTACCTTACAATATTCGATATTCTCGTGGAGGAAAACCATGTGAAAAGGGCTATTGGTTTTTACAGGGAGATGAGGGAAATAGGCATCCCGCCTAGTGTTGTCTCTATCAATATTTTGATCAAGGCCCTCTGCAAAAATGAAGAAACTATTGATGTTGCTTTTCAGATATTTCGTGAAATGCCCAACCGTGGATGCCAGCCTGATTCATATACATATGGTACATTGATTAATGGGCTGTGCAAGCTTGAAAAAATCAGTCAGGCAAAGGAACTATTTGAGGAGATGGGGGAGAAAGGCCTTTTGCCTTCTGTTGTTACCTATACTAGTTTGATACATGGCATGTGTCAATCTAATAATTTGGATGAAGCTTTGAGATTGCTTGAAGAGATGAAAAGAAATGGCGTTGAGCCAAATGTTTTTACTTATAGTTCTTTAATGGATGGTTTGTGTAAAGGTGGCCATTCATCACAAGCAATGGAGTTGTTAGAAATGATGGTCAGAAATCATCAATTGCCTAACATGGTCACTTATGGCACTTTAATCAATGGACTGTGTAAGGAAGGAAGGGTTAGAGAAGCTGTGGAGATTCTTGACAGGATGAGGCTTCAAGGCTTGAAACCAAATGCAGGATTGCATGGGAAAATCATAAGTGGCCTCTGTGCTGCAGGCAGTTATCAAGAAGCTGCAAACTTCATTGATGAGATGTTGCTTGGCGATATCTCACCAAATCGAGCAACTTGGAGGCTTCATGTCAGCATGCATAACAGGGTGGTCCAAGGTCTTTGTAATAATATTGATCCACCTCGTGCATTTCAGTTGTATCTAAGTATGCGTACTAGGGGTATCTCTGTTGAAACTGGTAGTTTCGACTGTTTAATCAAATGCTTTTGTAAGAGAGGAGACCTGCACAAAGCTGCTCGAATTCTGGAAGAGATGATTTTAGACGGCTGCATTCCAGATGAGGGAATATGGAATGTTTTAATGTGTGGACTTTGGGATCGAAAAAAAGTGAGAGAAGCCACTGAGCTATTGCTGGTTAAACTGAAGCAGACATTTGATGAAGCTGCAAGTTGA

Protein:

Promoter(3k):

>AM06G003950.1
CCTCCTTCCACCTTTGAAAAGGGACCCTTTTCCAAGATTTTTTGGATGCTTGTTTTTTGCAACCATATTTTCCTATTTTTCCTTTAACGGAACTGCAACAAAGGTTAATATTTGCTTGTCTTTTTGCTATTTTTTCGTTACATCTGTCTTCCATCCAAAGACGGATTATTGATATACGTCCTCCTAGCGTATTATCTATTTTTCCTTTTTCTATGCTATCTTTGAAATAGCTTTCTACCCCTTTGCAAACTTCCTCAGGAAGCTTTTTAAACAATAGTTCGTTGGCTACTGCTTTTTGTTCTGAGTTTAGTTTGTAGAAATGTTCTCGGAATTCACATATGAAGTTATCTAGATAGCACAAGTTGCATATCTCCATATTTGTAATATGCCAAAAGGCTCTACTTCAAAAGCCTTTCCTATGAATTCTGAAAGGAATATAATTAAAAGATTATCTAAAGTGTTTTCTGGGGTTCCGCTTATAATAATTTCTTCTACAGATGTGGGTATTTGTTTCATATAATTGAAAATTATACCACTTGTTTTATACATGATGTAATTATAAATATTTTGGGATGATAATCCTCTGAATTCCTCATTCTAATTTTGATTAAATCTATCAAGAGTGATTTTTTTTGATTTATTTTTTGTTCAGTTGTTAATATTCCCTTTAATTTATCCATGAGATTAGCCCTGGGTTTACCAAGGTTCATCATTTCGGAAGAAAAACCATTGTTAAAACATGGAAACGTTTAGAAAAATTGTTTTAATGAATAATAAATTCGCTAGATGTTTTAATAACTATAATCATGTAATTCATAGGCTACTTTCAAGACTTGAGTTTTTTCTGAACTCTTTTTCTTAGGGCACTCATTGGCATAGTGACCTTCTTCTTGGCAGAGCCAACATCTACAGCTCTTTTTTCCTGTTGGACATCGAGAAAAGGAGGAGGTTGGAAGGATGAAGGGCGAGGAAAGGAAATCGAGAAAAGGAGGAGGTTGGAAGGATGAAGGGAGAAGAGGAAAGGAGGAGGTTGGAGGAAGACGAGAGGACGCGAGTAGAAGAAGAAAGGAGGCGCAGGGAGAGCCAACATCTACAGCTCTTTTTTCCTGTTGGACATCGAGAAAAGGAGAAAAGGGGGGATGAAGGGAGAGGAAAGGAAATCGAGAAAAGGAGGAGGTTGGAAGGATGAAGGGAGAAGAGGAAAGGAGGAGGTTGGAGGAAGACGAGAGGACACGAGTAGAAGAAGAAAGGAGGCGCAAGGAGAAGAGCAAAAGAGGAGGTTGGAGTGATTAAGTGAGAAGAGAATTGGAAGACGCGTGGGTTTGAGTTTAGATGGGTGGAAACTGGAAAATTGCACTTGAGATTGGTTTTATTTACCGATGTGCCATTGGCTTTTTTCCCGCCTTGCATACTGAAAAGTAGATATTGCATTATAAAAGGGCGATGAAGCAAAAGCATGACGAGATGAAAGAAGCAAAGATCATAAAAGCTTGGGCTCTCACTTTTCCTACGTCCCCTCCTACTCACCCCACACCCTCAAAACCTGCGAAATGACCAATATGCCATTAATGAGGCGCGCTCCGTGTTTTTTTTTTCTGAAATTTTTAACGATTCGGTTAGGGTCAGCCGAATACTTTCGGTTAGGCACACCCGAACATGTATTTTTTGAGACACACCCCGCTTTTACCTCTTTTACACTATTTGGTTGACCTCAACTGAAATATTTCAGGAGGCCTCAACCGAATGCCATAAAAATATAGGTGTTATGGAAAGCCTATGTATATCTGTTTTTTCATAGGCTATTCGGCTGGCTTTTTCATTGGCCTTGACTTTTTACCTCCTAACAATTATTAGGGTGTTGCATATCAATTGTAGTTGAATTGTATTCATATAAAAAGGTGGGAAGTTGAATTAATACACTTATTTGACCTGCTTGTTGCCAAAATCGTTCTTTTTTTTTTTTATTCTGTTAAATTGTTGAATGGGGATACTACCTTGATATTTTCATCAATTTGCATTTCATTGTGACATAACATAACTAGTAGCCTATGAAAAAACAGATATACATAGGCTTTTCATATAAGCACTTCACGAACTCTATTCGGTTGGCCCCAACCAAACAGTTTTGGATCCCCTTCCCCGAACGAATAAAGCTGAACAACACACCCCTTGTTATTTTTAATAACTTTCGGTTGACCCCCGAATTACACGTAAACACGTCCTCTACTTAAAGGTATTTTTGGAATATTTGGAGTTAAAGGGTGTGTGGTGAGTAGGAGGAGATGTGGGAAAAGTCGAGGCCAAAGATTGAAGCCCAAACTAAGACCATTACTTGTGGCCCGAAAGTAAAGGATTGAAGCCCATTAATGGTGGAAGCCCCCTATACAAAAAGCGTGGAAAAAAAAAGAAAAAGAATTCGTCAAGAACAGTGGAAAGTTCGAAACAAAACGAAACGAAACTACGAAAAAAACCAGGAACGAAAGAAGTAGCAGCCTAGCAGGTTTGTAGGCATGGCGTTTTGATACCTTCTATATGCTACTATCTTCTCATATAGCCAGTAGCCACTGTACATACCTCACATTCTTCGTCACCATGTTATAGAATACGATGACATTGTTCAACTCACATAAAACAACCTGGCACGGTATGTTTTCCTTATTGTTTTTTATTCCAAGTAATTGTATTAAATAATTTTTTTTTGTTTTAGTTCAATATCTGTTAACACAGGTTTCGTAGATTGATGACTTACTGTTCAACAGCTCCATTTTGTAGGACACCTGTTTGTTGAAATGCTTCACTAGTATGTATTAGTAAAGTGAACTCCAACATTGTAGCTACAGTAATTAACATTGGTTGTTCTTCCAGATTCAGTGTAGTTTGGTCCACTAGGCATGATGTTGATGTGTGCTGATATTTCATGGAGATGCTTGTTGTGAGGAACTAGTCTCATTACAAGTTTTCAACATCTACCACTTCTAAGTATTATTAATTGGGATTATT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13041.9	PPR_2	123	167	5.40E-100
PF13041.9	PPR_2	153	203	5.40E-100
PF13041.9	PPR_2	196	238	5.40E-100
PF13041.9	PPR_2	224	273	5.40E-100
PF13041.9	PPR_2	266	308	5.40E-100
PF13041.9	PPR_2	294	330	5.40E-100
PF12854.10	PPR_1	185	217	3.80E-88
PF12854.10	PPR_1	220	253	3.80E-88
PF12854.10	PPR_1	255	288	3.80E-88
PF12854.10	PPR_1	293	323	3.80E-88
PF12854.10	PPR_1	403	434	3.80E-88
PF01535.23	PPR	192	222	7.40E-71
PF01535.23	PPR	227	257	7.40E-71
PF01535.23	PPR	262	290	7.40E-71
PF01535.23	PPR	297	326	7.40E-71
PF13812.9	PPR_3	178	229	3.60E-46
PF13812.9	PPR_3	213	269	3.60E-46
PF17177.7	PPR_long	167	287	1.30E-25
PF17177.7	PPR_long	241	329	1.30E-25

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003729	mRNA binding	Molecular Function
GO:0140053	mitochondrial gene expression	Biological Process
GO:0005739	mitochondrion	Cellular Component

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR002885	Pentatricopeptide repeat

trEMBL

trEMBL term	Description
A0A1S2X9T8	_

SwissProt

SwissProt term	Description
PP418_ARATH	Pentatricopeptide repeat-containing protein At5g46100

KEGG

KO	Description	Enzyme
K17710	pentatricopeptide repeat domain-containing protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G46100	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0280006772.01.T01	_
Oryza sativa L.	LOC_Os01g48140.1	pentatricopeptide containing protein, putative, expressed
Cucumis sativus L.	Csa016338	_
Glycyrrhiza uralensis Fisch.	Glyur000071s00005286.1	_
Codonopsis lanceolata	Cl_C00052_unscaffolded_00030T	_
Arachis hypogaea L.	AH20G07120.1	Pentatricopeptide repeat-containing protein At5g46100 like

Expression pattern