Detail information of Am06G003390.1 Annotation
Gene IDAnnotation
Am06G003390.1 U2 snRNP auxilliary factor, large subunit, splicing factor
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am06G003390.1mRNAChr0676455887653573-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF00076.25RRM_12993681.30E-31
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0000243commitment complexCellular Component
GO:0071004U2-type prespliceosomeCellular Component
GO:0016607nuclear speckCellular Component
GO:0022618protein-RNA complex assemblyBiological Process
GO:0016020membraneCellular Component

InterPro
InterPro termDescription
IPR006529U2 snRNP auxilliary factor, large subunit, splicing factor
IPR035979RNA-binding domain superfamily
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding alpha-beta plait domain superfamily

trEMBL
trEMBL termDescription
A0A1S2X9Q1 _

SwissProt
SwissProt termDescription
U2A2A_NICPLSplicing factor U2af large subunit A

KEGG
KODescriptionEnzyme
K12837splicing factor U2AF 65 kDa subunit

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT1G60900 U2 snRNP auxilliary factor, large subunit, splicing factor
Medicago sativa L.MsG0280006698.01.T01 _
Oryza sativa L.LOC_Os11g41820.1RNA recognition motif containing protein, expressed
Cucumis sativus L.Csa005609 _
Glycyrrhiza uralensis Fisch.Glyur000056s00004116.1 _
Codonopsis lanceolataCl_chr03_02190T _
Arachis hypogaea L.AH20G06460.1Splicing factor U2af large subunit A like

Expression pattern