Gene detail

Detail information of Am06G003040.1 Annotation

Gene ID	Annotation
Am06G003040.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G003040.1	mRNA	Chr06	6897917	6907485	-

Sequences

CDS:

>Am06G003040.1
ATGGCAAAGCGTGGATACAAAATACAGGAATTTGTGGCACATTCAAGCAATGTCAATTGTTTAAATATTGGAAAGAAGGCATGCCGTCTTTTCATTACAGGAGGGGATGATTACAAGGTCAATCTATGGACGATTGGCAAACCAACTTCTCTAATGAGTCTGTCTGGTCATACTAGTCCAGTCGAATCCGTCGCGTTTAACACAGGAGAAGTGTTAGTTCTTGGTGGAGCATCGTCCGGTGTGATTAGGCTTTGGGATTTGGAAGAAGGAAAGATGGTTCGCACTGTTGCTGGGCACAGATCTAATTGTACTGCTGTTGAGTTTCATCCATTCGGTGAGTTTTTTGCATCTGGCTCCATGGACACTAATCTTAAGCTTTGGGACATCCGAAAAAAAGGATGTATTCATACATACAAGGGTCATAGCCAGGGCATCAGTACTATAAAATTCACTCCGGATGGCCGTTGGGTAGTTTCTGGTGGACTTGATAATGTTGTGAAGGTGTGGGATCTAACTGCTGGGAAGCTCTTGCATGACTTCAATTTCCATGATGGACCCATTAGGTCCTTAGATTTCCACCCTCTTGAGTTTCTTCTGGCTACAGGTTCAGCGGATAAAACAGTGAAATTCTGGGATTTAGAAACCTTTGAAATGATTGGATCTGCCAGACGTGAGGCTACAGGGGTACGCTCAATAGCTTTTCATCCTGATGGAAGGACCCTCTTTAGCGGACATGAAGATGGTTTGAAGGTCTTTTCATGGGAACCTGTTATTTGTCATGATACTGTCGATATGGGATGGACAACACTCGGTGATCTCTGCATTCACGATGAGAAACTTTTGGGGTGCTCCTTCTTCCGAAATTCTGTTGGAGTATGGGTAGCAGATATATCGCTTATTGAGCCGTATGGTGCTGACTTGGATCTCAAGAAAAATGAAGGCCCGGAACAGAAACATAGTCTTAAGGAAAGTAAACTGGAGAAAGTAGAGGTTGATGTTGCACCAACTTCTGAATTTCGCAGCATGTCTCCCAATGAATCGAAAGAGATAAAGAATATATATATCGACTCTTCTGGAGGGAAGCCTATTGGTTTACAGAGATCAGGATCTGTTAATTCTGCAAGAGTAGATCTCCCAGAGGAATCAAAGGAAATTTGTAACTTGGAAACACTGAAGCAGAGTCCTGCAACAAAAGGTCATGTAAAATCAAATGAACAAGCAACTAGAAAATCTTTCATTGAGCCAAATATTGTACCTCGGGACATTCCTGCTGTTAAGGACTCCACAAAATCTGGAAATGAGACCATCACCTTCTCAAAGACAAAACCTGGGATGTTACTCAGACCTGCTCATATACGGAGAGCATCCACTGGCAGGTTTGATGTTGATAGGTTTTCAGATGGAACTTTTTGTGATACTGCAAGTAAATTAGACGGTGCAAAAGATCCTAAGTTCCAAAGCAATCCTGGATCTCAGAATGAAGTCAAAGAATCTTGTGAAGATAAACATCCTATCAAGAGCGTTGCAGACGACAAGTTTGACAAAACTATATCTCCATACAAAATTTTTAACCAAGTAAAACGTGATGGATCTCCCTGCACCGAAGAGATTAGTCCAGTTAAATATGTCAATGGAGTTGCTGTTGTTCGAGGAAGGACCCGTTCTCTGGTTGAGAGGTTTGAAAGAAAGGAAAAAATTCAAATCAATGAAGATGAAACTAATCCATCCCTCCCCACAATAAATGAAACAGGAGAAAAAATTCACAAGGAAGATCAAATTACTGCAACCCCCACCATGGAATCTGAGAGGAAAGAAACAATTACCTGCAATGAAGATCAAAACAATGCGCCCTTCACAATATTTGAGAGGAGAGAAAGAATTCCCCGCAATGAAGATCAAAACAATGTGCCCTCCACAATGTTTGAGAGGAGAGAAAGAATTCCCCGCGATGAAGATCAAAATGACGTGCCCTCCATTCCTAACACAGTATTTGAGAGGAGAGACAAAATTTCCCACAATGAAGATCAAAACAATGTGCCTTCCATTCCTAACACAATATTTGAGAGGAGAGAAAGAATTACCCGCAATGAAGATCAAAATAATGTGCCTTCCATTCCGAAGACAACATTTGACAAGAGAGAAAGAATTCCTCGCAATGAAGATCGAAAAAATGTGCCGTCCATTCCTAACACAATATTTGAGAGGAGAGAAAGAAGTCCTCGCAATGAAGATCAAAAAAATGTGCCCTCCATTCCTATCACAATATTTGAGAGGAGAGAAAGAAGTACTCGCAATGAAGATCAAAAAAATGTGCCCTCCATTCCTAACACAATATTTGAGAGGAGAGGAAGATATCCTCGCGATGATGATAAAAAAAATGTGCCTTCCATTCCTAACACAGTATTTGAAAGGAGAGAAAGAATTCCTCGCGATGATGATCCAAAAAAGGTGTCCTCTATTCCTAACACAATATTTGAAAGGAGAGAAAGAAAACCTCGCAATGAAGATCAGAAAAGCGTGCCCTCCATTCCGAACACAATAACTGAAGTTGATAAGTCTCCCAGCATACTGAAATTTGAGCCTCAAGTCTCTCCAAGGGATTCCAATTCAAACTCTCTAAATGAAATGGAAATCATTGAAGATCTGATGCAAACTCATGATGTAACATTAAGTACTCTTCGCTCACGGTTGACAAAGTTACAGGTGGTTCGGCATTTTTGGGAGCGGAATGATACTAAAGGTGCTATCAATGCTTTGAGAAAGCTGTCAGATCAATCTGTTCAAGCAGATGTTATCAGTGTCCTTGTGGAAAAGTTGGATGTTCTCACTTTAGATTTAGTATCTTCCATACTTCCTGTGCTCACGGGCTTGCTGGATGGCAAGATAGAAAGACATGTAAAAGTCTCACTGGATATGCTGTTGAAGCTTGTAGCACTCTTTGGTCCAACGATAAATGCAACTGTTTCAGCACCTCCTTCTGTTGGGATTGATCTACATAGAGAGCAAAGGCGGGAATGCTGCAACGAGTGCTTTATGCAACTGCAAAAAGTCCAAACAGTTCTTCCCATACTGATACGGAGGGGTGGTTTATTGGCTAAATCTGCCTTAGAGCTAAATCTTGTTCTTCAACAATCTTAG

Protein:

>Am06G003040.1
MAKRGYKIQEFVAHSSNVNCLNIGKKACRLFITGGDDYKVNLWTIGKPTSLMSLSGHTSPVESVAFNTGEVLVLGGASSGVIRLWDLEEGKMVRTVAGHRSNCTAVEFHPFGEFFASGSMDTNLKLWDIRKKGCIHTYKGHSQGISTIKFTPDGRWVVSGGLDNVVKVWDLTAGKLLHDFNFHDGPIRSLDFHPLEFLLATGSADKTVKFWDLETFEMIGSARREATGVRSIAFHPDGRTLFSGHEDGLKVFSWEPVICHDTVDMGWTTLGDLCIHDEKLLGCSFFRNSVGVWVADISLIEPYGADLDLKKNEGPEQKHSLKESKLEKVEVDVAPTSEFRSMSPNESKEIKNIYIDSSGGKPIGLQRSGSVNSARVDLPEESKEICNLETLKQSPATKGHVKSNEQATRKSFIEPNIVPRDIPAVKDSTKSGNETITFSKTKPGMLLRPAHIRRASTGRFDVDRFSDGTFCDTASKLDGAKDPKFQSNPGSQNEVKESCEDKHPIKSVADDKFDKTISPYKIFNQVKRDGSPCTEEISPVKYVNGVAVVRGRTRSLVERFERKEKIQINEDETNPSLPTINETGEKIHKEDQITATPTMESERKETITCNEDQNNAPFTIFERRERIPRNEDQNNVPSTMFERRERIPRDEDQNDVPSIPNTVFERRDKISHNEDQNNVPSIPNTIFERRERITRNEDQNNVPSIPKTTFDKRERIPRNEDRKNVPSIPNTIFERRERSPRNEDQKNVPSIPITIFERRERSTRNEDQKNVPSIPNTIFERRGRYPRDDDKKNVPSIPNTVFERRERIPRDDDPKKVSSIPNTIFERRERKPRNEDQKSVPSIPNTITEVDKSPSILKFEPQVSPRDSNSNSLNEMEIIEDLMQTHDVTLSTLRSRLTKLQVVRHFWERNDTKGAINALRKLSDQSVQADVISVLVEKLDVLTLDLVSSILPVLTGLLDGKIERHVKVSLDMLLKLVALFGPTINATVSAPPSVGIDLHREQRRECCNECFMQLQKVQTVLPILIRRGGLLAKSALELNLVLQQS*

Promoter(3k):

>AM06G003040.1
TGGCTGGACACGCATTGTGCTCTGTTTTTTCAATGAATCTTTTGCTTATCTAAAAAAAAATTGTGCTTTTACCCATTTAATGCCAATTCACGCGCGACTCAAATATAGAAAGTTTGGATTTGTTTTTGGTAAGAACTTAACGTTTAGATTAAATTTGATTAAATTTGTACAATAGATAGGTATGTCCTTATATAAGAGACCCACGGTACTTCATTCTATTTAGACATTTCGTATCTTTTGCCGGTTAGCCAAAACAACAAGAACCGTATACTTAATAATGAAAAATTGTCGCCGATGGTTGGTCTAAGTGGTAACTGGACTTGGATTCTACCTTAAAGTCTCGGATTTGAATATTGGGTGTGGCAAAAACTCTGAGAGGAGAGACTCACACGCAGTAGCGGACCCAACTAGTAGTGAATATTGTGAAGAATAGGTTGCGTAACCAGGTGGGGGATACATGGATGAACGACTGTCTGGTGACATACATTGAGAGCGATGTATTCATTAAAATTGGCTCCGAGCTTATTATTCTACGATTTCAGAATATGAAATCACGTAGAGGACAATTATGAAATGTATAATTTATTTATTTAAATATATTATAGTTGTTTTTAATTATATTTTTAGCAAATTGTGTATTTAAAAAATTTGACACCCCTGACCTCGTGGTCCTGGGTCCGCCACTGATCACACGGGCCGACAAAGCCGGAAACTCGTGGCCAGCCAAGTTCTCCAGCGTAGATTAGTCACCGGCAAAGCCGGTGAAAACTACCCACCAATGACATGATAAAAAAAATAATGAAAAATTGTCCATAGTTATTTAGAAGCAAAAATAGTTAATTCTAATCTCTACTTTAGAGTCTACTTAGTTCAAGTAACTAATTATTTTAATGCGGTTGATATATAGCCATCCATGTTCTTGAATGACAATGAAATGTGGGATACCCCGTTCAACGCTTTCTCTTAAACAATCAAAAATTATAGATAAAGAAATCTCCCTTTTATTCTCTTCCCGTTGCTTCTTACCCAATTGTTAGTTAAATTACTCATTAGATTAGGTAGATATATTGGGTGTAAACTATTCGTAAGCATTTTTATTTTTATTTAATAAGGTTTACAGGTAGATTCTATATAGTAGATATTATATTATTTGAACATTTATTATGCATTAATACAAATAGTTTAAAAAAGTTTTGACATTATTTTTATTTTAAAATAGAGGATTACATACATTACGTACATCATATAGACCGTAACGTATAAGACATAATAAATTAGAAAAAGTCACTATCAACGGTGCAATTCTTACCTCACATAAAATATTCAAATATCAAAAATATCAAATAATTTCAAAAACAAAAACCATTATTTTATAGCAACAAAAAAAACCCAACCCTTACTCCAAAATATGATTGTGCTTTGAAAACTTATAAAAGAAATAAATCCCATACCAATAGAAATGACACGTCACTCACAAATGGACATAATAATATGATATTATGTAGTTTAGGAATGAAACAACCGCAAGAAATGAAGGAATTTGGGTCCGTAGAAAAAATAGTGGCCATGAAATCTGAATTAATTTTTTTTCAATTATAATAAAATTTCTTTTTCTATTTTTTGGTTTTATCAAATTGATATATAAGACATCAAAAAGATATTATCCAGAATAAAATAAACGTTTAAATTTTACTTTTAAGAGACACCACCACAAAAAAAAACACACAAAAAAAAAGTACTTGTAAGTATCCAAATTTCTTTAGTTTAAGTATTGTCTTTTTTTTGTCTAGGGGTCTTTGACTTTGACCCCTTCGGTATCTTGGGAAATGGGCCCTGAATAATCCAGGGAAAGGTCTTTAGAGCATATATAAGGAGACTTCTTATCTCTTAAGAGTTGAAATTTAATAGATACGCCCATTGTGGAGAATAAAAAGTGGGTAATTAGGGTGGAACTCTTGTATAGGAAGTCCTCTCTCTCTTCTAACGTGTGGACCACACCTTTATTTTTGATTAAAACACTAACAAAAAAGTGATGCAAAGTTATTAGTGGGACCCATTTAGTAAATTTTGTTGGAGTCCTAAATTGGAGAGATGAAATTCTTATTAAGTACTATTATTAAAAAATTACAAAAAAAGTGATGTGTACACATGAGACCCATTTAAGTACTCAAATGAGAATTTTTCCGTTACGGATCCTCTTAGTTTAGGTATTGTCCAGTTGTTTGTCGGTATTTTTTAATTAGAAGTATTTTTATTGAAAAAATCTTAAAGAACTTGATATGTATTTCAAAAACTAAAATAATCAACCTCAGAAAGTTAAAAAATTTAAATGCAACCATAAATGTAATTTTAAACTTGTCAGAAAAAATGTAATTTGAAAATTTATAGAATTATTTTCAAAATAAAATTTGGTTCCGTTCATAGCTTAACCTTGAGTTAGGAATTTACTTTCTTTGCACTACCACTCAACGTATACTTCCTCTACAGTCCACATATTAAAGCAATAAAATTAATTAAAATAATAATAAATAGTAAATGCTTAAAAGGCAAATTGTCAAAAAAATGCTTAAAAGGCAAAAAGAGTAGGAGAGAGAAAATTAAGCCATTTAATAACTCTTATTTTTTTTTTTAGGAAAATAAAGAAAGAAGAAAGAAAAATATTTCCTTTCTCTCTCTCACTATTGAAATCTGAGTTGTTCTTCTTTTTATCAATTGTTTTTCTTTCAGACCATTTTCCCTTCTCTCTGACACATACATCTATTCCAATTCTTAGCTTCTGCGTAGGATTTTCATTTTCCATCGACCCAAGAAACTGATTCCTCTCATTTTCCTGTCCCTCTTTTTCTTTCTTTTCCTTTTGAATCGTGCTGGAGTAGTAGCAGGTAGCAGAAGCAGAAGTAGCCATATTTGAAGTCGACCCAACTCCTCAATTGGTTCTTTACTTCAGAAAGGGATTTCATTTCAGGATCAGAAGCTGGATTCTGAGGTGCCCAACAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13925.9	Katanin_con80	884	1041	1.10E-51
PF00400.35	WD40	91	128	3.60E-41
PF00400.35	WD40	134	170	3.60E-41
PF00400.35	WD40	174	212	3.60E-41

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0051013	microtubule severing	Biological Process
GO:0008017	microtubule binding	Molecular Function
GO:0005874	microtubule	Cellular Component
GO:0007019	microtubule depolymerization	Biological Process
GO:0005737	cytoplasm	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR026962	Katanin p80 WD40 repeat-containing subunit B1
IPR028021	Katanin p80 subunit, C-terminal
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
G7ILH1	_

SwissProt

SwissProt term	Description
KTN82_ARATH	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2

KEGG

KO	Description	Enzyme
K18643	katanin p80 WD40 repeat-containing subunit B1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G61210	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0280006671.01.T01	_
Oryza sativa L.	LOC_Os04g58130.1	katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
Cucumis sativus L.	Csa016260	_
Glycyrrhiza uralensis Fisch.	Glyur000046s00004837.1	_
Codonopsis lanceolata	Cl_chr03_17870T	_
Arachis hypogaea L.	AH10G03340.1	Katanin p80 WD40 repeat-containing subunit B1 homolog like

Expression pattern