Gene detail

Detail information of Am06G002760.1 Annotation

Gene ID	Annotation
Am06G002760.1	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G002760.1	mRNA	Chr06	6252500	6257936	+

Sequences

CDS:

>Am06G002760.1
ATGGCAAAAAAATCAACGAGAGAAGAGAAAGAAAAAGAATGTCTTCCTGATAATCTCCGGTGCAGTCGCACAGACGGCCGGCAATGGCGGTGCCGGCGGAGAGCGATGGAGAACGTGAAGTTTTGCGAGATTCATTATCTGCAAGGTCGACTTCGTCAGAACAGAGAGAAAGTTCCAGACTCACTGAAGCTTCAAAGAAACATGAATAAGAAGAAAAAGAGGAAGAAGCTGATGAAAAACGACGTCGTTGAGATTATTAGGGCGAAGAAAAAGAAGAAAAGGAATCAGAAGCAATGTGATGTGCAATTGGACTTGATAAGAATGGTTCTGCAAAGAGAGGTTGAGAAGAAGAAAAAGAATAAGAAGGATGTGGATGAGGAATCTGAATTGCATTACAGTGAGGGTGAGTTGAGGAAAGAATTGCCCAATGGTGTTATGGAAATTGCTCCTCCTGTTTCAACATCCTATGATGTTGGTTTTCACTCTAATGTTACAGTTACACCACGTTACTTCAGGTCCAAGAATGTTGATAGGAGGATCGCTTATGATAATTTTCATGTTGTGGGATATGGAGGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGAATCTTGGAGTCTTATAAAGTGTTCCACCTGCCAGAAAGAGTTTTTCTGCATGGATTGCATTAAAGAACGGTATTTTGACACTCAAAACGAGGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGTACATGTAAAGATTGCTGGGCAAATCAGTGCAAAGACACTGAAAGTAAGAAATATTTGGCTGGTATAAGCAAAGTTGATACGATATTGCATTTTCATTATTTGGTCTGTCTGCTCCTTCCTGTGCTAAAACAAATAAGTGAAGACCAGCATACAGCGCTAGAAACAGAAGCAAAAATTAAAGGGAAAAGAATTTCTGATATTCTCATTAAGCAGGTTGAATTTAGCTGCAATGAGAAAATTTACTGCAATTACTGCAAAACGCTGATATTGAATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGCCTGTGCTTAAGATGTTGTCAAGCATTGAGTCAAGAAAGCACCTCTGAAGATTTTAACTCTTTTATATTCAAGCTACGTGACAAAGCAAATGCTTGCATTGCTAGTGAAAGCTGCCTTTTGAGTGATAAGGCCATTTATTGTGACAATGATACTTCAATGTTAATTGATTGGACCAGTTGTAACGGTGTGGACAGTGTATCATGCCCTCCTACAGAGCTAGGTGGTTGTGGTAATGGCCAGCTTGACTTAAGATGTGTCTATCCCTTGAGCTGGATCAAAGAAATGGAAGTGAAGGCGGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAATTTTGGATAAAAATTCAAGTTGCTTACTTTGTATTGACAAAGATCATAAAACTTACGGATACAAGCAATTGCAAGATGCAGCTCATAGAGAAGGTTCTAATGATAATTGCTTATTCTACCCTACAGTTTTGGACATCAGTAGTGATCATTTTGAACACTTTCAGAAACATTGGGGTAAAGGCCACCCCATAGTTGTGCGAGATGTGCTCCATACTCATAGTACACCAAATCTCAGCTGGGATCCTCTGGTGATGTTTTGTGCTTATCTTGAGAGGAGCATTGCAGGATATGAGAATAATAAAGACTTGCTTGAAGCTTGTTTGGATTGGTGGGAGGTGGAAATTGACATTAAACATTTTTGTACTGGGTCTCTTAAATGTGAACCACACAAAAATGCTTGGCATGAGACGCTGAAACTAAACGGATGGTTATCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTTCTGAAGTAATTAACTCTCTTCCTCTTCAAGAATACATGAATCCCATGTCAGGTCTTCTGAATTTGGCTGCAAATTTGCCAGAAGAGAGTAAAAACCATGACATAGGGCCATATGTCTATATTTCTTATGGCTGTGCTGACAAAGAAGCTTATTCTGTGACAAATCTCTGTTTTGACCCATATGATGTGGTTAATATTATGGCACATACCACAGATATCCCTCTCTCTACAGACTATCTTACTAAAATAACGAAGTTATTGAAAAAGCACAGAACCCTATGTCAAACGGGCTCTTCGGAAACCACTTCTGAGCATGCAAAAGAAAGGGAACAAAAGGAACTGCAGAGTAAAGAAACTGACTTTCTCAGGAGAGTCAATAGAACATCTCACATCTCTACTGAAGTCAAAACAATAGCTAAGCAAAGTATAGAGACCAATACTTCCAGCAATGGAGAATGTGATTCCGATTCTGATACTGGAAAAGCACAGAGATCATCACCTTTCAACAAGTCAGTTCAAAGAAATGAAATGTCTCCAACTAATAGTCCTAGAAAACCCTTTGAAAACAGTGATAAGAGGAAGAAGTTTACTGTGAATTCTGTTGCTCAGTGGGATGTCTTCCGAAGACAGGATGTACCGAAACTCATAGAATACCTAACAAGACATTCTGATGAACTTTCTTGTACCAGTGAATATCACAGCAAGAAGATGGTTCACCCAATTCTCGATCAAAGTTTCTTTCTCGACCGCAGTCACAAAATGAGACTTAAGGAGGAGTTTGAAATTGAACCATGGACATTTGAGCAAAATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATCCAAAGGTCAGTATTAACTTCAGTATTAAACCTTTCCTACTTGATCTGCCACCTCTAGTCAATTTACACAGCAAAAATATGAACCTTTCTGGAATTGAATATACATTCTTTTTGAACGTGGTTACTTTGAAATTTCCTGATAATTTCAATTTTGAAGTTACTTCTAAGAAAATGATTTGTCAAGATTTTATGAAAGTGTGCAGCTATCAAAAGAAAACGAAAATGAAAACTATTGATGGCCTTTGCTCTCAACATGATTGCTGA

Protein:

>Am06G002760.1
MAKKSTREEKEKECLPDNLRCSRTDGRQWRCRRRAMENVKFCEIHYLQGRLRQNREKVPDSLKLQRNMNKKKKRKKLMKNDVVEIIRAKKKKKRNQKQCDVQLDLIRMVLQREVEKKKKNKKDVDEESELHYSEGELRKELPNGVMEIAPPVSTSYDVGFHSNVTVTPRYFRSKNVDRRIAYDNFHVVGYGGNLKKGRRKKCHWCQRSESWSLIKCSTCQKEFFCMDCIKERYFDTQNEVKMACPVCRGTCTCKDCWANQCKDTESKKYLAGISKVDTILHFHYLVCLLLPVLKQISEDQHTALETEAKIKGKRISDILIKQVEFSCNEKIYCNYCKTLILNLHRSCLSCSYSLCLRCCQALSQESTSEDFNSFIFKLRDKANACIASESCLLSDKAIYCDNDTSMLIDWTSCNGVDSVSCPPTELGGCGNGQLDLRCVYPLSWIKEMEVKAEEIVCSYDFPEILDKNSSCLLCIDKDHKTYGYKQLQDAAHREGSNDNCLFYPTVLDISSDHFEHFQKHWGKGHPIVVRDVLHTHSTPNLSWDPLVMFCAYLERSIAGYENNKDLLEACLDWWEVEIDIKHFCTGSLKCEPHKNAWHETLKLNGWLSSQLFKEQFPAHFSEVINSLPLQEYMNPMSGLLNLAANLPEESKNHDIGPYVYISYGCADKEAYSVTNLCFDPYDVVNIMAHTTDIPLSTDYLTKITKLLKKHRTLCQTGSSETTSEHAKEREQKELQSKETDFLRRVNRTSHISTEVKTIAKQSIETNTSSNGECDSDSDTGKAQRSSPFNKSVQRNEMSPTNSPRKPFENSDKRKKFTVNSVAQWDVFRRQDVPKLIEYLTRHSDELSCTSEYHSKKMVHPILDQSFFLDRSHKMRLKEEFEIEPWTFEQNVGEAVIIPAGCPYQIRNPKVSINFSIKPFLLDLPPLVNLHSKNMNLSGIEYTFFLNVVTLKFPDNFNFEVTSKKMICQDFMKVCSYQKKTKMKTIDGLCSQHDC*

Promoter(3k):

>AM06G002760.1
TGTTTGAACGAGGAGGCACCTTGTGCTTTTCAATTTCTTCTATCTTGTTCTTGGCAATTTCAGTTTTGCACATTAATTTAATTTTTAGCATATATATGTTTTAATCGCGGAAAAAAATTGCAAAAGTGCATATGAAATATTGCATGAATATATATATTCTCTCTTTTTTTAGAAAACTTGACAATCATGTGTTTGGTTATGTGTTTGGTTGCTCGTTTGCACAGATTGTATTGTGTCCCAATGCTACGTTTTGTGAGAAGCTTGAATCAGAGTCCCCATTTTGCTATTATGTCATCCACTGAAACATTTATTAATAATACATGGATGGATATTAATTAGGTCCTTGGTTTCCTTCAAAAATTCTCTCTCTCTCTGTACACTTCAATTTAGCCTCTTCAGAAATTGCAAAAGCTGATTTTCATTTTCTCATAATTTTCTCTCTTTTTTTGGGAATATTGTATGCATGAGTATTCAACTTAGTTTGAAATATTATTATGTTATGATCCCTTACTTGGTAACATCATATTGAAATTGAGAATCATAATAAAAGCAAGGTACAATTACAGAGTAGTTTATCCTACTCAACATCAAATTAAAAGTGCAGCTATTTGAGGAGTTAATAGCCAATTTGGTCCCTCAAATTTTGTAAAGTTCATTTTAGCCCTAACACCAACAATTTTACTAATTTGTCCCTGACATTTTTAAACGTTATTCAGTTTAGACGTCCCTCCAATTTTTGATGTCTGTTTGGTCTCAAACTTTTACAACTTAATATTAATGAGGTCACTGACTTTTTCAAATATCTAAGACCAAACTGATACTAAGTTGTAAAAGTCATAGACTTAATTGATATTAAGTTGTGAGAGTCAGACACCAAATAGACATTGATAATTTGAGGAATTAAACATAATAACGTTTGGAAATATAAGGGACTAATTAATAATATTGTTAATGTCAATGACTAAATTGAATTTTTCTGAAATTTGCGCGAATGTCCAAACTAGCTATTAACTCTCATTTGAAATCAAGGAAAAGAAAATTAGCTACTCGGGAGAGCCCTATAGAAACTGTATTAAAGTAAGTGTTCAAAGATTATAAAATAAATGTTTGCCTTTGAATTTATTTTAGCTGCTCTTGTAACAACTAATTGATGTGCAGAAGAGGTTCAAAGATATTCCTGATAAAGACAAGACACGTTACTTGCTAAAAGCCTTTGGAAGAACATATATATTCATTCTCTATATAAATTATTGAACTCTCATTTAGAATCCCTTAACTCACCATTTGAGCTGATTTGTCGAGTAATTATGAGGTTGAGGTTGCACTACGGAACACTCTTGGTGCAAGGATTTCTCATATAAAGTCAAAAGAATCATACTCCCTCTGGATTCATTTATAAGCAACAAAAATGCTTTTTAGATTCATTGAATAACTGATGTATCTGGTCTATAATATAGACAAGTTACAGATAAACCTAAAAAGTGTTTTGTTCTTATAAACGAGACCGGAGTAGTATATGTTTGGATCTCATTTCGAGACCCTATCTCAAATTGACCAATTTAAAAAACAAAAATAGTAACCACAAGTTTCAAGACTGTGATCAAATATCAGAATCACACTTCTATTTAAACAGATTGTAACGTTTTTACAAAACAGAACAGCTCAAGTTGATTGGCTTACATGTGTCGCGATGGGAACTAACTACCTTTTCATCAAAAGTATGCAGCAGTTATCCTCCCTGCATTCATTCAATTTTGAGCCCAATATTTCAACAAAAAGTAAACACGGGAGAAATGGGCTCATCAAACAACATTTTATTATGGTTTTTCAGCCCACAAAAAATTACACTTAACTTCATTTCATGCTCTGAATCTGATTTACACTACTGAATGAACCTCTAAAAATCAGCTAATTTCCACCATAAAGAAATATTTCATATTTATCATACACTATTTCATTGCTATTTGGCTGTGGAGGGCTCCTCAACTTTTCTGTTTCTAATTTGAATTTTCTTAAACTGAAAATCCAAAAATAAAGTTTGACAAATTGGTTCTTCAAAGCTTTTTCATTTACCTTTTGATTGGCAAAAATTTAAATTAGGAGAGACAGACACACTCTATGAAAGTCAAGGAGAACCGCTAACCTCGACAAGTTCTTACAATGAAATTCACGTAAGACCTACTAACGGAAAATTCAGGATTCTAACACGAGTTATACCTAATGTGAGCAGAAAGTCCGAGCATATGTGCCACGAAACTGAAAATTCAGGATTCGAAAACACGAGCTAACCGAAAATTTCGAACACGAGCTATAGTTATAGCTAATGTGTACAAAAAACTGTAAGATCACACATTGGCATACTGTTGTAGTCTGGCATGATCAGTTTGGTCCATGAGATTGCACATCAAAAATATTGACTTTGATTTAGACATCAAGAACAAAAGCATATATATTTTTATTATATACATCCCAAAAATATCTACCAAACTTGATTTATTTATATATCTCCATTGTTTAATGCAAAATTAACATTATTGATTTCAGGCCAAAACTTCAAGAACAGCAATTCTGTTCAAACAGTCCCACAATAAACAACTAGAATTTTTTTGCATACATATAATTTGCAACCAAAACCCAAGTCCAAATCACAGTAAGAAAACAAAAAAAGTGAAAGCAAAATTCAATTCCCATATCATTCTTTTTTTTAGAACTCTATCAGGTCAGTGACCAAAAAGATATGGAAAGGATTTTGAAGATTCCTGATCAAAATCCCAATGAGAGACTAAACAGGACTCTCTAATTCTCAATTATTACGGGTATATAAATTAATTAAATAAATATATAAATAATATGCTTACACTGCTACTCAATTAGGTCTAAAATAAAACAACAAACCCTTTTCTTTTATATTTCTCTGCGTGCTTGCTCCCTTTCACTTTCTCAAGCAAAATTTTCCCCAGAAAATCCCAATTTCAGTAGAAAAATTTGATTTTTTTTCTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08879.13	WRC	16	57	7.10E-17
PF02373.25	JmjC	822	915	1.70E-10

Gene family

Gene family	Subfamily
Transcription Factors Family	Jumonji
Epigenetic Regulators	JMJ28
Transcription Factors Family	WRC

Gene Ontology

GO term	Description	Category
GO:0016491	oxidoreductase activity	Molecular Function
GO:2000028	regulation of photoperiodism, flowering	Biological Process
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0006367	transcription initiation at RNA polymerase II promoter	Biological Process
GO:0010628	positive regulation of gene expression	Biological Process

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR014977	WRC domain
IPR003347	JmjC domain
IPR045109	Histone demethylase JHDM2-like

trEMBL

trEMBL term	Description
A0AAN9LEH8	_

SwissProt

SwissProt term	Description
JMJ28_ARATH	Lysine-specific demethylase JMJ28

KEGG

KO	Description	Enzyme
K15601	[histone H3]-dimethyl-L-lysine9 demethylase	[EC: 1.14.11.65]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G21430	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase
Medicago sativa L.	MsG0280006601.01.T01	_
Oryza sativa L.	LOC_Os02g58210.1	jmjC domain containing protein, expressed
Cucumis sativus L.	Csa000597	_
Glycyrrhiza uralensis Fisch.	Glyur000044s00005175.1	_
Codonopsis lanceolata	Cl_chr03_16980T	_
Arachis hypogaea L.	AH20G05660.2	Lysine-specific demethylase JMJ25 like

Expression pattern