Gene detail

Detail information of Am06G001590.1 Annotation

Gene ID	Annotation
Am06G001590.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G001590.1	mRNA	Chr06	3887970	3889318	-

Sequences

CDS:

>Am06G001590.1
ATGGGGCTGCATCACCTTCACAGAAGAAAATTGATGCCAGAAATCTGTGAGCTGATATGTCACGGTAAGGAGTTCGTATCTTGTTCATCAAAACCAGATTGCGATGCTTGCTTCAAAATCTGCCTAACAAATCCTCAATATCCATATTATAATTACCCTCCTCCACCACCACCATCAAAAATTCCTCCTTCTTTCTACTTAAATGAAGAAGATGAAGATCACCAACACAAAATCTCAACTTACTTGATCCTCACACTAGCTCTCTTAGCTACAATTTTCTTTGTTGTTTGTTGCCGTCTCATCTACAAAAAACTAAGATCCAGAAGAAGAACAATAACAACAACATCATCAACACAACAAAGAGAAGAAACCCTAGATGAAGAACAAGGTCCTATGGTATTGGTGGATCATCCTATTTGGTATATTCGAACACAAGGTCTTCACCACTCAATTATCAACAGCATCACAATTTGTAAGTATAAAAAAGGAGAAGGTTTAATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGTGAATTTCAAGATGATGAAAGTCTTAGACTTTTACCAAAGTGTTACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCTCATACTAATTGTCCTATTTGTCGTGCTCCTATTGTTACTAACCCTAACCCTTCAATTCCAATGATTCCTTCTCTTGATTCTATTGTTGTTGATTCAACTTTCTCAAGGATGGAAAATAATGGTGGAGGATTGGAGAATACTACTGCTAGTAGTAATGGTTCTGATACTGAAGAGAGAGAATTGGAAATTGAAGAGGTGGTTACTGTTAGGCCAAGGAGATCTGTTTCTCTGGATGATTCTTTGGTTGCAATTGCAAATATCAACAATCTTGCTATTGCAAATGTTTTATCAGGAGAGTCTAGTGGTGGTGATTCCGATGGAGTTTTGAAGGTTATTGGAAATGAGAATTTGGCAACTACTTCCAATTCTAAAGGGAGTTCTTCTTTTAGGTTAACAAGAAATCTGAAGGGTGTGCCTAGTCCAATGAAGAGGTCACGTTCTTATAATGGCAAATATATTCTTTCATGGTATAGTCGTAGTCAGAGGAAGTCAAATGCTTCTCTGAACAAAATGGATATGTAA

Protein:

Promoter(3k):

>AM06G001590.1
TTCTTACTAAACAAAATATATAAACACCCGTTAAGTTACACTTCAATTATTTGTTTAATTGTATTTTACTAATTATATTTAATTAGTTTGTTATTATCTTTTAGAGTTTGTTTAGAAGATAAATGGTAGTTAGAGAAGATAAATAGTACATTAGTATTATTTAAACTCAACTCTACTAAGTCTTTGCAGAACGTTCAATTTCACTCATCAATCAATAAAATGAGACTTTCACTCTCAGTTCTCTGTTTCATATATAATTGACGCCACACTTTTAATATGGTATCAGAGCAAAAAAAAAATAATCAGGAGCTGATTGAGCTTTCGCGTTCCTCTCTTCTCGGTGATTCCTCCATTGTCTTCTCGCGATTTTCCTCTTCCGGTTTGCGATTCATGAATAATGGTGCTCATCGTGCTATCAGAAGAAATTTCTTGATTTTTCTTCCACATGTTCTTGGAGATTCTTTGCGTTCATCATTCTTCATTTGTTCTTTGATTTGCTTGGTTGTTGTTCAACTCATCTCTGCCATGGCAATTCCTCCACAAAATTACTATGACACATTTTACCTCCATCCTTCGGATAATCCCGGTCTTGTGTTGGTATCTCAACATCTTCCTAAGGACAAATTCAGTCACTTCTTGCGTGTGTTTAAGAAATTCATTGAAGCTTCTTCCTCGATCTTCACTCGAGGCAGCTTCATCATTCAAGAAATATTTTGAAGCTTCTTCCTCGATCTTCTCTCTAGCCAGCTTCATCATCATTACTGACTTATGTTGGTTATAACTCACAAATATCCATGCCTAAGCCTATTCTAGATTTCTTATTGGGCTAAGATCTCTATTATTCCACCTATTTGTTCACACTCCAGTTGTCCAGTCCTCGGTGCGAAGTGGTGTGTTGAGATCCTTGTTATTTCACTTGTATCAGTCAATGCTTCAGATGTCTAGTCCTGAGCGTGAATGGTGTGTTGAAGTCCCACATCGACTAGAGATATGGCATAAGCAATCTTATTAGCTCGTGAAATCATAAAATCAAATGATTTTCAAGGGTATATTTGTGATGTCAAACAATTCCAAGACCCCTGTTCTCAGAACTCATTGGCAAGATGGGAATGTTTGACATCTATTCTCCATTTTGAGGGGGGTATTAAGTTACACTTCAATTATTTATTTAATTGCATTTTACTAATTGTATTTAATTAGTTTGTTATTATCTTTTAGAGTTTGTTTAGAAGATAAATGGTAGTTAGAGAAGATAAATGATGCATTAGTATTATTTAAACTCAGCTCTACTAAGTCTTTGCACTACGTTCAATTTCACTCATCAATCAATAAAATGAGACTTTCACTCTCAGTTCTCTGTTTTATATATAATTGACGCCACACTTTTAATTTTAAGCTATAAAAAAAAACAAAGGAACAACTATATGCGGTCTCAAATGTAATTTTTAAAACCTATTTGTATTTTTTAATGTGCATATGAATGTTACATAAATTGAAACTTATCTGAGTATCATAAATTGAAAAATATAAACAAAATAATAAAATTAAGGCTTAAAGGTACATTTGGTCACTGCAAATATACAAAAAATCCTGCCGTCCCTGCAATTTCAAAATTTTTTAAAAAGTCCTTACAATTACAAAACGCGTTTAATTTCGTCCCTACTGTTAACTTTTGACAAAAAGTGTTAGTTCCTTGTGACGTGTCTGCCATTTTATATTAAAAATTACAAAACCAAAAACTAATCTTCTTCTTCCTCTCCTCTGGCAGTAGAAGCGGCGGAGATGACCACCGACATGGTGGTCGCCGGTGGAGGGTACTAAGATAACAAAATTTGTTGAGGGCTTTGTGAGAGGATGACGTGTAGATTCTGAATATCAAACTCGTTTTTCGACTGAAGGTCCATGGTTGCTGGCAAATAAGCAAGAAGGTGGCGGTTTGAAGTTCTCAGATCCATGAAAAACACAAACGCAAACAGATCTGATCCATAAAAAATGCAATGGCTCTCTGTGCGTTTCTTTTGTGTACGTTTCTATGCGATTGAGAGCTAGGAAGCAGATAGAAGAAAAGAACTAGAACTAGATTCAAGAAGAGAGAAGACAACGAACCAAAAAATGGGTTTCTGGGTTCTCGGTTCTGTGTGCGTTTCTGGCGTTTTCATGGTTCTGGGGTTTTAATTTGTTCTTAGAACTTCAAGCGTTTGCGTTCTGCGTTCTGCGTTTGTGTGGTTCTGGGTTTTAATTTGTTCTTCGAACTTTTAGCATTTGCGTGGTTCCGAGTTTTAAGTTGTTCTAATACTTGATTTGGTTTTGTTTTAGTGGTGTGTGTAGTTGAGAGTGATGAGTGAAAGTGAGTGATGATGATGTTGTTTAGCGTGAAGAAGAAACACCGTCTGATGATGATGTTGTTCAACGTCAAGAAGAAACAGTGGTGATGATAATGTTCAGCCTGCCATTTACCTTCAATTTTGTAATTTTTAATTTAAAAATTAATTTATTTAAACTGAAATAAATATAATAAATAAAAAATATGAGTCAGCATGCCAACTTGGCATTCAACATGGCAGACACGTCACAAGGAACTAACACTGTTAGTCAAAAGTTAACAGCAGAGACGAAATTAAACGTGTTTGGTAATTGCAATGACTTTTTTAAAACTTTTGAAATTGCAGGGATGAAACAGGATCTTTTGTATATTTGTAGGGACTAAATATACTTTAAGCCTAAAATTAATAGTTTTAGAAATAAATTGAATTTTTGACTTTATTAAATGTGAATAATTGATTTTAATGTTTTTTTATTATGTGTATGATGACGTAGATGTTGCTTTCTTATATTGTTGATATTTTTGATAGGAGAGAGTATTACAAATAAGTTTCACAAGTAATGGAAACTTGAAAGTCAAAGTTGGAGACCCCCACCTTATTATTATCATCTACCTTGAAGGTTGATATAGAATTCTCAATTGAACTCCAAATGTTAATTTGATGCTTGGTCTCCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	171	214	9.30E-13
PF17123.8	zf-RING_11	171	200	1.00E-10
PF12678.10	zf-rbx1	172	214	5.20E-09
PF13923.9	zf-C3HC4_2	171	213	7.20E-08
PF00097.28	zf-C3HC4	172	213	9.80E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0016567	protein ubiquitination	Biological Process
GO:0016740	transferase activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0051536	iron-sulfur cluster binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR044675	E3 ubiquitin-protein ligase RING1-like

trEMBL

trEMBL term	Description
A0A8B8K0A0	_

SwissProt

SwissProt term	Description
ATL54_ARATH	RING-H2 finger protein ATL54

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G72220	RING/U-box superfamily protein
Medicago sativa L.	MsG0280006479.01.T01	_
Oryza sativa L.	LOC_Os04g37740.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa003257	_
Glycyrrhiza uralensis Fisch.	Glyur000136s00007950.1	_
Codonopsis lanceolata	Cl_chr05_36520T	_
Arachis hypogaea L.	AH20G08310.1	RING-H2 finger protein ATL54 like

Expression pattern