Gene detail

Detail information of Am06G000220.1 Annotation

Gene ID	Annotation
Am06G000220.1	eukaryotic translation initiation factor 3C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am06G000220.1	mRNA	Chr06	650188	654494	-

Sequences

CDS:

>Am06G000220.1
ATGGCTTCGAGATTCTGGACACAGGGAGATAGTGAATCTGAGGAAGAGCAAAGTGATTATGACGAGGAGGTTGAAACTACAGCGGCTGAAACTGGTGGTCAAGCGAATAAAAGCGATTACTACCTGCAGGGCAATGCAACTGACAGTGATGACGATGATGGCCAAAAGCGCGTTGTTAGATCAGCAAAAGATAAGCGTTTTGAAGAGATGGCTTCCACTGTTGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCAAGAGAGCTTTGACAAGATCAACAAACAACTTGAGAAAGTCATGCGTGTCACTGAGGCTGTGAAAGTCCCCAATCTCTATATCAAGTCCCTTGTCATGCTCGAAGATTTCTTGTCTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTCAATGCAATGAAGCAGAAACTGAAGAAGAATAATAAGCAATATGAGGAATTGATTAATAAATGTAGGGAGAGTCCAGAGAGTGAGGAGGAAAAGGACGACGATGAAGATACCGAGGAAGAATATGAAAGTGATGATGAGATTATTGATCCCGAGCAGCTTCGGAAGCAGGAACCAAAATCTGATTCTGAAGCTTCTCAATATGAAGATGAAAATCCTGATGATGCTGCTGATGGACCTTGGGACCAGAAGTTTAGCAAGAAATATAGGCTTTGGGTGAAACAATTCACAAAAAATCCAAGTGAGATCACATGGGAGACTGTTAACAAGAACTTTAAGGAGGTTGTGGCTGCTAGGGGAAGAAAGGGAACTGGAAGGTTTGAACAGGTTCAACTACTTACCATCTTAACAAAAGTGGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGACATATGCCCATAAATGTGTGGAAAAAATGTGTGCAGAATATGCTGGTCATTCTTGATATTCTAGTGCAGTATCCAAACCTAAAGGTTGATGATTCCATAGAGCCAGATGAGAATGAAAGTAAGAAAGGAACTGACTACGATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCCTAGAGAGAATAGATACTGAGTTTTTCAAGAGCCTGCAGTGCATCGATCCTCACACACGTGATTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTTTTGTTCTTGCACAAAATGTAGAGGAATATCTTAAAAAGACTGGAGATTTGAAAGCTGCTTCTAAGGTGGCATTGAAGAGGGTTGAACTCACTTACTACAAACCACAAGAGGTTTATGGGGCCATGAGAAAATTGGCTGAGCTGACAGAAGATGGAGATAATGGAGGGGAGGCAACTAAGGAGTCAGAAGGGTTTGAGGATACAATAATTCCCACTGCATTTGTTGTTACTCCAGAGCTTGTGGCCCGGAAACCTACCTTTCCTGAGAAAAGCAGGGTCCTAATGGATGAATTAGTATCTCTAATTTACAAATCTGGAGACGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCTCAATAGCCCGTGACCTGTTACTTATGAGTCATTTGCAAGATAATGTTCAGCATATGGACGTCTCAACACAAATACTTTTTAATAGGGCCATCTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGACTGATATCTGAAGCACATGGCTGTTTGTCGGAGCTCTATTCTGGTGGAAGGGTAAAAGAGCTGCTTGCTCAAGGCGTGTCACAGAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAACGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAATCAGTGCATCTTATATCTGCTATGCTGCTGGAAGTTCCAAATATGGCAGCCAATGTTCATGATGCAAAGCGTAAAGTCATCAGTAGGAATTTCCGTCGCTTGCTTGAGGTCAGTGATAAACAAACATTCACTGGTCCTCCTGAAAATGTTAGAGATCACATTATGGCTGCTACGAGGGTTCTCCATAAAGGAGACTTCCAAAAGGCTTTTGACATTATTGCGTCTCTTGATGTATGGAGATTTGTAAGAAACCGAGACATTGTTCTAGAAATGTTGAAGGACAAAATCAAGGAGGAGGCACTTAGAACATACCTCTTTACCTTCTCTTCATCTTATGATTCTTTGAGTCTGGATCAGCTCACAAAAATTTTCGACCTCTCTGTTCCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAAGTGGTTGCATTATATTCCGAAATGTTGAACACTCTAGGGTGCAGGCTTTGGCATTCCAGTTGACAGAGAAGTTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAGGCAAGGATAGGTGGTGGGTTGGATCTGCCTCCAAGGCGGAGGGATGGCCAGGACTATGCTGCCGCCGCTTCTGGTGGCAATGCGACTTCAGGTGGTAGGTGGCAAGACTTGTCACTTTCTCAACCTAGGCAAGGCAGTGGACGTGCAGGATATGGTGGAAGGCCATTGACATTCGGTCAAACAGCTGGGGGTGGTGGCTACTCAAGGGATCGAACGGGACGAGGAACAGGTGGTGGCTATCAGAGTTCAGGGAGGACTCAAGGGGGTACATCACTGAGGGCCCAGGGCGATGTATCTACTCGCATGGTTAGCCTCAAAGGTGTTCGTGCTTAA

Protein:

Promoter(3k):

>AM06G000220.1
GCAGGGAGAGCACCTGCTGATTGACTATTTGGGGCCACCCCCCAAGATGCCGCTGAACAAACTTCTGCGCGAGGGTTGTCAGTTGGTCTTGTATGGCTGAGGGATCATGTCTACCACCCAGCCATAGCTGAGCAGAGGTGGCATCATGCTGCTAGGGCCTATTTGCTCTATCTTTTGGGCTGCACATTGTTCGCAGACAAGTCAGGAAGCAAGGTTAAGCTTGGCTACCTAGGTATGCTTCTTGATTTGAACAATGTTGGAGACTACTGCTGGGGGGCAATGGCCCTTCCCCATCTTTATGATCAGCTGAAGGATGCTTCAAGAAAGAAGACGAAGAAGATGGCTGGTCATATGGCTCTACTACAGGTATAAAACTTACTCTTTTTTTTTATAAGTTTGCTTTAGGTTTACTTTCAGATTTATAATCAACCAATGATATGTTCATTACAGGGTTGGATTTTTGAGCACTTCCAGAGTGCCAATTTTACATCTTGGGTGGTGCACCCAGAATATGTTGAGAGTATGCCACGGGCGAAGAAATGGCTGTGTAAGGATGGCCCCTGGGGCCATCAAGTCACACACCATCAGACTGTGCCTTGACCGGCTACACCGTGAGGAGGTCACCTGGGACCCCTACACAGGCCATAGGCAGGAGAGACCCTTTGAGGAGCTGGCCAGGTTCAGAGGGTTCATCCGGAGTGCTGGCTGTATGGTGAGCCATTTGCCGGAGTGCGTATTGTGTCCACGTACAACTCTAAGACTTGTCGCCCCATCAGAAGTGTAGCATGATATTCCATCATGGTCCCAACGTCGTCATCGTTGCGGATCTCCATAACTGAAAAATAGCCAGTCCCGTAATCAAGACGGTTGTACTTTCGGTAACGTATACGCTCCACGTCTTTACGCCACGCTCCCTCTGGACGAATCTTCCTCTCAGCCTTTTCCTTCAGTTGGGCGAAGGTGATGTCCTTACTCATCCTGCAGAATACATGGTTAGGACAACGAAACACAACACCATGTTCGTCGGTGGTGACAGTCCCATGGTGATGAAGGGCCGTTAGGAATTTGTCGTTTGAGTACTGGGTTGGGCACAATTGCCATTCCATTTCAGCTTGGTTGTAGCTGTCAAGAGGGAGAGTAGGTTTTGGTGAAGAAGCAGATTAGGGTTTGATGAAGAAGGTCTAAGGATGTGAACTCCCTTTTATAATAGGCATGGTGAAATGTCAGCCGTTGATTTCATTTTTAGATCACAAATCTGAGCCGTTTAAATTCTATCCGTTCAGACACATTTTCCAAAGGGATTGACATCCACTCCTTTATCTGACACACATTTGACTGATTGTAAGCCGTTGAACACCTGTTCGCATGACCACATTCGAACCTGTTCGCATGACCACATTCGAACCTGTTCGCATGACCCCATTCGAACAGGTGAAAAACACCCAAGAGGGTGTGTCCCCATATTTAACACACGCGAATGGCCTCGTGCGAACCTGTTCGAAGGCCCGTGTTCGAACAGGTGAAAATTCGTGAAAAAAAAGAGGTTTGGCCTGGCCTTTTGGTCATTTCACACCCTTATGGGGTGTGTTTTGAGTAGAAGGGTGTGGGAAAAGCAAACGCCAAATAGAAAACCATGCCGAATGAGGCCTTAGGATTTTAGTTTGTAAAAACTTTCTGAAGGGATTTTTTTTTGTACCCCCATCATCTCCCTAGCTACCCCCACCGACCCTGCGAAAAGACGCAATTGTCCTTAACAAAATTTAAAAATCCTGAACGTATCCTGAGTTCATTTTTTTTTTTGGAAATCGGATTTAGGTAAATCCGATTTCCACTAAAAATTTTAAAAAATTTAAATCGGATTTATTTAAGATGGGTAGATCCGCTTTTAAAAATAACAAATCGGATTTACCTTAAGTGGGGGTAAATCCGATTTGTTATTTTTTAAAAGCGGATCTACCCCATCATATAAGGTAAATCCGCTTTTAAAAATAACCAAAGCGGATTTACCTTATGTGGGGGTAAATCCGCTTTGTTATAAACAAATTTCGACCGTCTTTTGGTTCTGTTTAGTGTGTAGTTCGTTAACACGTGACGATATTGTACGTCGGGAGAATAATTTAGGCTAAAAAATCAGTTTTCGGGCAACCTACTCAAATTGTAATGAAACCACTCCGATTTTCATAATTTTTGGATTAGTTTTGGCTGTTTAACGGATTTTTAGTAGTATTTTATAACCTTTTTTAAAAAATTAAATAAAAAACAATTTTTTTTAATAACAAAATCGGATTTACCTTAGGTGGGATAAATCCGATTTTTTTTTTTAGGGAAATCGGATTTATCTTAGGTGGGATAAATCCGATTTTCTCTTTTTTTAGGGAAATCGGATTTATGTACCCACTAGGTAAATCCGATTTCCAAAATAACAAAGCAGATTTACCTCCAGCTAAGGTAAATCCGCTTTGTTATTTTTGAAATCGGATTTACCTATTGGGCACCCCCATATGAGGTAAATCCGACTTTAAAAATAACAAAGCGGATTTACCTCAAATGGAGGTAAATCCGAGCGAATTGAAAATTGGACAGGGGTATTTTCGGGTTTCACTTTTATGTGGGGTAGATTGGGAGATGATGGGGGTACAAAAAAAAAACCTTTCTGAATATGGGTGTGGCCCATTTAGGTGGAACAGGCCAAATGTTCCATAACCTTTTGACCAAAAAAAAAAAGTTCCATAACCCTAACCCTAAGATATCGACGTCGGCACTGCAGCGCAGTTCGCTCAGACAGCTTTCGCAGCTCCGCCTTGCCCCGCCCCGCCCCGGCTTCTTCATCCCTATTGCTATTGGATTCGATTCTCCAGAGAAGATACGTAGTTGCACAAAAGGTATGCTACAATTCTAAATCACGAGCGTCTATTTTTCACTGTATTGTGTATACACGGATTCGGTTATTGATTTGATGTTGTTATTTTCATTGAAGCTACTCAGAACGTTTGACGAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05470.15	eIF-3c_N	45	655	6.20E-241
PF01399.30	PCI	663	791	4.10E-19

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005852	eukaryotic translation initiation factor 3 complex	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0000502	proteasome complex	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR000717	Proteasome component (PCI) domain
IPR008905	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR027516	Eukaryotic translation initiation factor 3 subunit C

trEMBL

trEMBL term	Description
A0A9D5AL72	_

SwissProt

SwissProt term	Description
EIF3C_MEDTR	Eukaryotic translation initiation factor 3 subunit C

KEGG

KO	Description	Enzyme
K03252	translation initiation factor 3 subunit C

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G56150	eukaryotic translation initiation factor 3C
Medicago sativa L.	MsG0280006305.01.T01	_
Oryza sativa L.	LOC_Os07g03230.2	eukaryotic translation initiation factor 3 subunit C, putative, expressed
Cucumis sativus L.	Csa015784	_
Glycyrrhiza uralensis Fisch.	Glyur000006s00001611.1	_
Codonopsis lanceolata	Cl_chr08_24770T	_
Arachis hypogaea L.	AH16G43710.1	Eukaryotic translation initiation factor 3 subunit C like

Expression pattern