Detail information of Am06G000060.1 Annotation
Gene IDAnnotation
Am06G000060.1 Zinc finger C-x8-C-x5-C-x3-H type family protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am06G000060.1mRNAChr06337140357138-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF00642.27zf-CCCH2592862.20E-11
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0089701U2AF complexCellular Component
GO:0030628pre-mRNA 3'-splice site bindingMolecular Function
GO:0000398mRNA splicing, via spliceosomeBiological Process
GO:0005681spliceosomal complexCellular Component
GO:0046872metal ion bindingMolecular Function

InterPro
InterPro termDescription
IPR000571Zinc finger, CCCH-type
IPR009145U2 auxiliary factor small subunit
IPR035979RNA-binding domain superfamily
IPR003954RNA recognition motif domain, eukaryote
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding alpha-beta plait domain superfamily

trEMBL
trEMBL termDescription
A0A8B8JJ92 _

SwissProt
SwissProt termDescription
C3H5_ARATHZinc finger CCCH domain-containing protein 5

KEGG
KODescriptionEnzyme
K24273U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT1G10320 Zinc finger C-x8-C-x5-C-x3-H type family protein
Medicago sativa L.MsG0280006299.01.T01 _
Oryza sativa L.LOC_Os02g35150.1splicing factor U2AF, putative, expressed
Cucumis sativus L.Csa011976 _
Glycyrrhiza uralensis Fisch.Glyur000250s00014113.2 _
Codonopsis lanceolataCl_chr05_32120T _
Arachis hypogaea L.AH12G20290.1Zinc finger CCCH domain-containing protein 5 like

Expression pattern