Gene detail

Detail information of Am05G039560.1 Annotation

Gene ID	Annotation
Am05G039560.1	DYNAMIN-like 1C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G039560.1	mRNA	Chr05	177220525	177227740	+

Sequences

CDS:

>Am05G039560.1
ATGGCGACTATGACGAGCCTGATCGGGCTCATCAATAAGATCCAACGAGCCTGCACCGTTTTAGGAGATCACGGTGGCGAGGGTTTATCTCTTTGGGAGGCTCTTCCATCCGTCGCTGTTGTCGGTGGACAGAGTTCAGGTAAATCCTCAGTATTGGAAAGTGTCGTCGGAAGAGATTTTCTTCCCCGTGGATCTGGTATTGTAACGCGGAGGCCACTAGTGCTGCAACTTCATAAAACAGACGATGGCACACAGGAATATGCCGAGTTTCTTCACTTACCACGAAAGAGATTCACAGACTTCGCTTCTGTGAGGAAGGAAATAGCAGATGAAACAGACCGTATAACTGGGAAGTCAAAGCAAATTTCTAACATTCCTATTCACCTCAGCATTTACTCTCCAAATGTTGTAAACTTAACCCTCATAGATCTTCCTGGGTTGACGAAGGTTGCAGTAGAGGGACAACAAGAAAGTATTGTTCAAGATATTGAAAACATGGTCCGTTCGTATGTTGAGAAGCCAAACTGCATTATTTTAGCTATTTCTCCCGCCAATCAAGATATTGCCACTTCGGATGCCATAAAAATAGCAAGAGAAGTTGATCCTTCAGGTGAAAGAACATTTGGAGTGGTTACGAAACTCGATCTCATGGATAAAGGAACTAATGCGGTTGATGTTCTCGAGGGAAGGCAATACAGGCTGCAGCATCCATGGGTTGGAATTGTTAATCGTTCACAGGCTGATATTAATAAAAATGTTGACATGATTGTTGCTCGTAAGAAGGAGCGTGAATATTTTGAGACAAGTCCTGAATATGGACATTTGGCACATAAAATGGGCTCAGAATACCTTGCTAAGCTTCTATCCCAGCATTTGGAGCAAGTTATCAGGCAGAAGATACCTAGTATTATTGCCTTAATAAACAAGACCATTGATGAGCTTAACGCAGAGTTGGATCGCATTGGCCGGCCGATCGCAGTGGACTCAGGGGCTCAACTATACACTATTTTAGAGATGTGTCGTGCATTTGACAAAGTATTTAAAGAGCACCTGGATGGAGGACGTCCTGGTGGGGACCGGATATACGGAGTTTTTGATCACCAATTACCGGCTGCTTTGAAAAAGCTCCCCTTCGATCGCCATCTTTCCTTAAAAAATGTCCAAAGAGTTGTTACCGAAGCTGATGGGTATCAACCCCATCTGATTGCTCCAGAGCAGGGTTATAGAAGACTGATTGAAGGGTCTATAGGCTATTTCAAAGGGCCAGCTGAAGCCTCTGTGGATGCTGTCCATTTTGTTTTAAAGGAACTTGTACGAAAGTCTATTGCAGAAACTGAGGAATTAAGAAGATTTCCAACACTTCAAAGTGATATAGCAGCTGCTGCAAATGAAGCTTTGGAAAGATTCCGAGACGAAAGCAGGAAAACAGTTTCACGGTTGGTTGATATGGAGTCTAGCTATCTGACAGTGGACTTTTTTAGGAAGATTAGTCTTGAACCAGAAAAGAATCCCAATGGACCACCGAATTCAAATCGGAATGCTCCCCCAAATATGGACAATTTTAGTGACAATCACCTCCGCAAGATTGGATCCAATGTAAGCTCTTATATCAACATGGTCTGTGATACACTTAAGAATACTATACCAAAGGCCGTAGTTTATTGCCAAGTTAGAGAGGCTAAGAGATCATTGCTAAACTACTTTTACGTTCAAGTTGGAAAAAAGGAGAAGGAGAAATTGGGCGCCATGTTGGATGAAGACCCAGCTCTTATGGAAAAGAGAACCCAAATAGCTAAAAGGCTTGAATTGTACAAGCAAGCCAGGGATGATATTGACTCCGTGGCTTGGAGATAA

Protein:

Promoter(3k):

>AM05G039560.1
ATAAGAAGGAAAACAGAACATTATATGTTGGAATTAATTAAATCAAGAAGGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAAGACAATGAAATAGTGAAAAACGGTGCCTGGTTTTAAGAAACCAGATATCTAAGGTTGAAGATAATTAGGGACCAAGTTGTCTCAAAGTACGAAGGACTAATGTGGCCCAAAATAATGACTTACGTGGCATTTAACGTGAGACCGTGACACTTAACATGCCACATAGGAGACGTTGAATGAGCTATCAACGGCTGAAGGGATGGAGTGACTAACGTGTCCTGTTTTGAAAATGTCAGGGACTAATGTGTCCCAAAAAAATTTGCCAGGGACTAATTTGTCCCGCGAAGAAATTGTCAGTGACCAATTTAGGTCTTTACTTTTTTTTTTCTTTTGTAACCAATTTTTTTGTTACATTAGTAATTTAGTACTATTTTTTTTGGACCAACATTAGTACTATTATTATTTGTTATACTACACACATTTTTCTTCTTAAAGCGAAAAATACAATATTGCGATAATTAATGCAATGCATGTTCTTTCTAATTCTTGAATTGCCCTGTTGAAGTCTCACTTCGTCTTGTGTATGAGAAACTTGACTTCTTTCATCATAAATCCGTTGTTTAGTCATGATGAAATTGACGAAGTAGGTAAAATATACATTCGGAGGTAGTCTCCAAGTGGGCCCTCCCCCCACTTTTGGCGCCAATATCTCTCTCCCTTCCTCCCTTTGGCGCCAACTCCTCTCCCCTCCATTTTTTTTTGTTTTTTTGTTTCTCCAAAAATCTCCCCACTCCCTCCTTTTTTTTTGTTTTGTTTGTTTCTCTAAAAAACTCCTCCTTTTTTTTTGTTTTGTTTCTTTCCCCAAACTACCCTCCCTTTTTTTGTTTTGTTTCTTTCCCCAAAATCCCTCATTCTCTCCTTTTTCTCCCTCTTTTTTTTTCCTTGATATTTTTTATCTTAGGGTAATTTATGATCCAGCAAAAAAATTTAATTGTTCACATAGGTGAAAAATGTTCCCCCATAATTCATAATTTTATATTTTAAGGGTACTTTAGGGTTCACTAGAAATTTTAACTGTTCAAATAGCGAAATTGATTCCTCCATAATCAGATTAGTGAAAATGAAAATTAATTTCGCAATAAATTACGTAAAGTTATTTTTGATGCTAAGTAGTGTGTTTTTTTTATACTTTAGTGTTCGTAAAAAAAAACTAATCGTTCAAATGCTCAACGTTCAGTGCTCAATACCGGGAAAAAAATTAACTGTCTGAATGCGCAAAATTTATATTGGTGAAAAAAAAATCAAAACAAAATATGTAAAGTTCGATGCTAAGTAGTGTGTTTTTTTAATAATTTAGTGTTCGTAAAAAATATTCATCTATTCAAATATGTTATATAGAGTGTTGTTGTCTGATATCTTATGTAATGTGATAATGCGTTAAACTAAAGTTATTTGATTATCATTTGTTGTCTATATTTTAATGGATCAATTTCATTTGTGTGCTGATTTTTTTAAAAAATTTAACCGTTTGAATTACTTATGTTTGAATTATAATTTACTATGCTACTTTATTTCTATGGACTATTACTTATGTTTAAATTATAAATTCCCGTTAATTTGTGTGCTGATTTTTAATTTATCCATCAAATTTTAATATCCCAACAATTATAAAGCTTTGACCCCGTGCATCGCACGAGTCCCGGTGCTAGTTTCAATGAAATGAAAAGTTTCTCAAGAAGGTTTTTTGAGTCTTGAACATATGATCTTTAGTGAATATCCAGTGATCTGCTTAAAATCTCTTCTAACCATGATTAGATTGTGAAGAGCTCTACGGACATTGTTAAGTATAAATAATTGAAAATCACCAAGAACATCATCATTCTTATCTTGCAGTGTCTTCTTATTAGAGCATGTCAAATGACGAGTAACTTGTCTGCTTCTACACAGTAAAGTGATATTTGTTCTATTTCTATAGACCACACTCAAACACACAAAAAAGCTGCCACTTTATTAAAGAAAAACGGAGTCATTTCTCATCTCCCAACATTCTGAGTTGTGTTTTCTTAACTCCAATGAGCAGAAAATTAAAAATAAAAGACAAAATAGAAAATATGGATCACTTACACAACACCTATCCATCTAAAAACAACAAACCATGTATGAAAAGAAAATTACACCACATGAACATATTAGCCCAACTTTCAACTGATATCTATCTACTATCTAGCTTAAATGCTTAGTACAAATTATCATTTTTATATTTTAAAAAAAATGTTAATTTAGAAAATTTGAGAAAGTGACAACACAATTCCCACACATCTACATATGTTAGAACTGATCATTGAAAAGTGCAAACAAACAACACACTCCAACAATTTCTTTTAAACACAAAAACTCTTCAATTAGTTAAAATCAAGTGATATTCTTATAATTTCGTAGAATTCATTCCTTAATTAATACAGTAGAATCCACTTAAATTTCAACTAATAGAAAGAATGTTTGTTAAAAAAAGAAGAGTAGTATACAATATGCTGTTGCCAGCACTTCCATCCATTTCCATTTATTTTGTGAAATGTCATGTCACAAATGCACAAATAGTCTTCGAAATGTGACTGTGGAACTAATTTGTTCAATGACTAATTTACCCATGACCCACATGAAAATTGAAATAAAGAACCGTTTGGTTTGTTCGTCCCTCTCTCCCTTTCTCTATATTCCATTTTTTGTTGTGTTCGTGCTGGTTTTCTTTCCTTTCCCAGTTTGGATGCGCATTGTGCATCTGAAACTGATCTGATCCAAAAAAAACAAAACATAACAAACCTTCCTTCTCTCTCTCCCTCGCTCCCATTTCTGATCTGAATCTGATCTGTGAAGTGTTGTTGTAATATTTGGATCCAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01031.23	Dynamin_M	222	489	3.50E-61
PF00350.26	Dynamin_N	38	213	9.00E-55
PF02212.21	GED	524	614	1.30E-24

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005874	microtubule	Cellular Component
GO:0005525	GTP binding	Molecular Function
GO:0008017	microtubule binding	Molecular Function
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR020850	GTPase effector domain
IPR030381	Dynamin-type guanine nucleotide-binding (G) domain
IPR045063	Dynamin, N-terminal
IPR019762	Dynamin, GTPase region, conserved site
IPR001401	Dynamin, GTPase domain
IPR000375	Dynamin stalk domain
IPR003130	Dynamin GTPase effector
IPR022812	Dynamin

trEMBL

trEMBL term	Description
A0AAN9MNW8	_

SwissProt

SwissProt term	Description
DRP1C_ARATH	Phragmoplastin DRP1C

KEGG

KO	Description	Enzyme
K27686	phragmoplastin DRP1	[EC: 3.6.5.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G14830	DYNAMIN-like 1C
Medicago sativa L.	MsG0780038143.01.T01	_
Oryza sativa L.	LOC_Os03g50520.1	dynamin family protein, putative, expressed
Cucumis sativus L.	Csa000247	_
Glycyrrhiza uralensis Fisch.	Glyur000595s00018299.2	_
Codonopsis lanceolata	Cl_chr01_31540T	_
Arachis hypogaea L.	AH13G45950.1	Dynamin-related protein 1C like

Expression pattern