Gene detail

Detail information of Am05G039530.1 Annotation

Gene ID	Annotation
Am05G039530.1	Zinc finger, C3HC4 type (RING finger) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G039530.1	mRNA	Chr05	177186240	177195762	+

Sequences

CDS:

>Am05G039530.1
ATGTCATTACCGAACTACGACACTCAGCCCCACGCGCCGCTACTACGCCCGCGGCGCGTGGAACGCACTCCTGTCCTAGCGCTCCTACTGGGCAGACGTGGCCCTTCCGTGCTGGTTCGGGAGACTGCGGCGCGTGAGCTGGAGGAACGGCGGGCGGACTGGGGCTACTCGAAGCCGGTAGTGGCGTTGGACGTGACGTGGAACACGATCTTCGTGCTGGTCTCGGCGGTGATGTTGGGTTGCACAGCGGAGGAGAATCCGAACACGCCGATCCGGTTGTGGATCTGCGGATACGCTGTACAGTGCTTGGTCCACGTGGCATTGGTGTGGATGGAATACAGGAGGAGGAACGGGAATGGAGGCGGAAGGGACGAGGAATCTCTTGTGGACGATATCAACGACAGTGAAGACGACGATGTTGAATTTGGGAATTCTCCTCGTTCCAGATTTGCCAAACGATGTGCGTCATTAAATACCATGCTCTCATTGCTATGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTTTGCAAGATGCTCCACGGTTGTACTGGGTGGCTGTCATCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGCTGTTGTTTACCCTGTATTATTGGCATTCTCTATGCTGTTGCGGGACAGGATGGGGCATCTGAATCAGTTCTCAGTGGACTTCCAAAATACAAATTTCAAATGCTTAACAATGAGGAAACCCCTAGTGACAGAGGTGGATCAATGATTCCCATTGAAAATAGCAGTGATTCCCTGGCAAATGAACGAGTACTTTCACCTGAGGATGCGGAATGCTGTATATGCATCTCTTCCTATGAGGATGGAGCTGAACTCCATGCTCTTCCTTGTAACCATAATTTCCATTCCACCTGCATTGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAATACAATATTCTTAAGGGCAATGAACAGGTATGA

Protein:

Promoter(3k):

>AM05G039530.1
AAAACAGACATTATGGCTGGAAATAAAATTAAAAGTTAAGGAGGTGGTTTATAGTCCCCCCCCCCCCCGACGCCACCATTTTTTATTTTTTTTGGCAGCAACACGGAAATATAAGGGGTGAACGAGACGATGAAAGACACGACAACATCAAAGAGAGTGTATATGTTAGAGTGCCTGGGAGAGAGAAACGATGAAGAAGCCTTTTAATGAAAACTAAAAGAGTGCATATGTGAGAGTGAGAGTGCTTGAGTAGCATTATTCCCCCTAAGTTAGTCCCACATCAAATATGTATAGCTTTAGGAACGTGAGTGAATGTTATAAATAGAACATCAGAGGCTGCGCTTGAACTAAAATTGGTGCATTGGCTAGTTGCCATGTTTGGTCAGGATACGTGGGGTCCATGGGCAACCATTTTTTTAAAAGGCAGTTTAAATTTTTTTTCCTAAATTGTTTTAAACTGTTTGTTCTCCAGTTATAGCGATTTTTAATCGGCTCTTAATTCGATTTAAATGTTCAACGATTTTGGGCCTCAACCGAACAGCTTCCCTCCCCGGTTCACGGTTCAACCGACCGGTCCGATTTTCTAAACCATGGTTTTTAGTCCAAATAGAAAGTGTATACATTGCTAACATTTTTTTTAAGCAACAGGCAGGAGGCCCGAATTTATTAAAAAAATAAAAACAATACAAAAAGCACAAGGGGGGACTAGGCCAAAACCCTTGGAAATAAGGACAATAAAGAGAGTCTAACAAAGACCTCTAAACTAAACAACCTTAGTCCACAATCGAGTCACCACACTCCAGACCACCGGCGGCGGGACCCCATCCATCATCGCGAAGTCGTGCCACCGGCCAACACCGAGACAGCACCTAGCTTGATCGAGGAAGTCGAGCCACCAACCACCACCGTGGTATTGCGCCCCCAGCCAACACCGAGGCACAATCAAGCAGAACCGCGAGCGACAGGGAAAGGGCCCACACCGAAATGGGGGGAGGCGAGACTGCGGGTCCAAATTTCGTGACGACAGCCACCAATGCCAAACCAGAAACAGTCAGCATCTACGAACCAACGCAACAGTCCCAAACCAGAAACAGTCAGCATCAATGCGATCCGAACAGCAACGCAACCGAACCCAAACCAGAAACCCACGACCCGAACCCGAACGCAACCCAGACAGCGCCGGATCCGAACCAGACGGACGCAGGGAGGAGGCTCAGGCGGCGGTGGGACAGGAACAACCACCGCAGGGGGAGAGACCCACAGCACCCAATAGATCCGACTCCGAACAACAGATCCGAACCAGAGCGCACCGAAGCTAGCATCAACACCAGCCACAGCGTACGGAACCACCCAACCCATGACCTTCTCAGGGGCGACCACCACACGCGGAGCAAACGCCGGGGAGAACGCACCGAATCGTACAGCGACTGCAATCGGAACTGACAGATTCGAATCCACCTTCGCAGGGGCGTCGACTGCCGTCTCCGGAAAAAGCCACTCGTCGCGAAACCAAGGGTCTTCAACGGTTGGCCGCCCAGTCAGCTGGAGCAGATCGGCCGGTGCAGGCACGGCTGCCGCCACGGCGTAGGACAACCCATCTCTAGGGTTCGCAGCCTCTCTCTCAAGAGAGAGGATCTGTATCATATTCCCCTCGTTGTATACATTGCTAACATACTACTACTAAAAAGCAAGTGTGAGTATGTTAGCATATGCCTGATTTTTAGTCCAAATAGTAAATGTATACATTGCTAACATATTACCACTAAAAAGCAAGTGTGAGTATGTTAGCATGTGCCTTCTTTCGTTATACCTTCTTCACGTATAGTATCTCAGTGGCAATATTATATGACCAGCTGTTAAATTTCGTTGCTGTAAAAATTAGCAAAATCATTTCTGATGAGTTTAGTTGGTTATCACTTATCAACAGGATGATATGCAACTTGGGGAAGGAATTACTGTCAAGTTTATGAAATTGGAAGGTTGTTGCAGTAAATGATTGATTTATAAGGGTGTTGCTAATATTGCTTTGAAGATAAGGAGTCAAAGGTTATCTTGCTGAAATTCAAGTTACATTCGGGAGGGAGCTTTCGAATTTGATAATTCTCTATGGTGGCTGCTGCAATATTTGATATAAAAGTTAGTAGGATGAATGGAAAACGATAGATAGCAGAAATGCAAAATGGGAAGAACCCAATAACATGTCGGCTGGATATTGAGATATTCTTTGTTACAAGCACTACTCTCCAAGCATCGAGTATTTTTTTTACTCAGTCTTGATTGGGAGGTAGGCGACTTAGTAGTGGATTGCCTTGACCAAATATATGATCTGATATGACTGTGATTTGATATGCTCATTAATATCGTCATATTCAAAGATAAAGTATGTGATGAAGAACTCTAATTGCCACAATATTTTTTTGGTCTACTTAGATAAAATGACAAATAAACACCACGCACACACACTACCACTGCTCACACCCGAGTTCAAATCCGGGAGCCGACGTCCCCATGTCACTGAAATTGCCAAGACAACCAACGGTGAGGGACAAATCACCACAATATGATATTGTGCTTAAAAATAACAAATTAATATGAAATTTTAATAGTTTAAATATTATTTTCCACTCACAAAAAATTGCATCATTTAGTTATACACGAGTTTTTCTACCAACTTACAAAATATAAATTATTTGACAACAATTTTCAATAGCATACTTATACTTGTGCATGGCACGGGTCAATTATTCTAGTTACAACCAAATGAAAATGAGTGACCCTAATTCACTTCTTTCTCTTAAACCAAATAACCAATAAATCTTGATACTCTTTCTCAATTATTTCTTTCTTCTCTATTTCGTCCTCCAAACAAACATATGAGAAGCCAAAGAATAACGAGGCCAAACAAAAACAAATTATTCTTTTCCCTTGCTTTTTGTCTTTCGACTAACAACTACAACAATTATGCTTTGGCACCCTCGCGCTTAATAATCTCTAATAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	287	329	2.00E-12
PF12678.10	zf-rbx1	287	329	5.30E-09
PF17123.8	zf-RING_11	287	315	1.40E-08
PF13923.9	zf-C3HC4_2	287	328	3.30E-08
PF00097.28	zf-C3HC4	288	328	1.50E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process
GO:0046872	metal ion binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A2K3PD11	_

SwissProt

SwissProt term	Description
RIE1_ARATH	E3 ubiquitin protein ligase RIE1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G68070	Zinc finger, C3HC4 type (RING finger) family protein
Medicago sativa L.	MsG0780039472.01.T01	_
Oryza sativa L.	LOC_Os02g45240.1	zinc finger family protein, putative, expressed
Cucumis sativus L.	Csa021649	_
Glycyrrhiza uralensis Fisch.	Glyur000790s00021795.1	_
Codonopsis lanceolata	Cl_chr01_31430T	_
Arachis hypogaea L.	AH15G20470.1	E3 ubiquitin protein ligase RIE1 like

Expression pattern