| Gene ID | Annotation |
|---|---|
| Am05G038650.1 | Transducin/WD40 repeat-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G038650.1 | mRNA | Chr05 | 174608377 | 174616220 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF04564.18 | U-box | 392 | 462 | 1.60E-14 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | U-box |
| GO term | Description | Category |
|---|---|---|
| GO:0004672 | protein kinase activity | Molecular Function |
| GO:0016874 | ligase activity | Molecular Function |
| GO:0009116 | nucleoside metabolic process | Biological Process |
| GO:0055085 | transmembrane transport | Biological Process |
| GO:0005524 | ATP binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR001680 | WD40 repeat |
| IPR003613 | U-box domain |
| IPR045210 | PUB protein, U-box domain, plant |
| IPR016024 | Armadillo-type fold |
| IPR011989 | Armadillo-like helical |
| trEMBL term | Description |
|---|---|
| A0A072U6A2 | _ |
| SwissProt term | Description |
|---|---|
| LIN1_LOTJA | Putative E3 ubiquitin-protein ligase LIN-1 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G06880 | Transducin/WD40 repeat-like superfamily protein |
| Medicago sativa L. | MsG0480023837.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g12930.1 | U-box domain containing protein, expressed |
| Cucumis sativus L. | Csa010949 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000061s00006539.1 | _ |
| Codonopsis lanceolata | Cl_C12504_unscaffolded_00020T | _ |
| Arachis hypogaea L. | AH13G23370.1 | Putative E3 ubiquitin-protein ligase LIN-1 like |