Gene detail

Detail information of Am05G038320.1 Annotation

Gene ID	Annotation
Am05G038320.1	homeobox protein 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G038320.1	mRNA	Chr05	173892139	173894358	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G038320.1
TCTTCTCCTTTCCACATATTATCTGCATCTTCAACAATAACACAAACACAACCCAGAAAGAAAAACCAGAGAAGCCATCACCAAAACCCCATATATTCTATCCTCCATCTTCAACCCCAATCTCAGAGTGAAACGGAGTGATAAAACGAAGTGACAGAGCGGTCACAGTTCTCTCTCTCTGGTGCGATGGTGGAAAATTCTGGCGCGGTGGTCACCAGAGCAAGTTTCTCCAATCACGAAATTTGTTGAGGGGTAATGTAGTAGATGATGTGGGGATTTCAAATCTGTGATTAGTTTTCCGATTGGAGGTCTAGATATACCGAAAATCTGCAACAACGCAGTTCTTCAAGAAAAACAAGAAGAACAGATATGAAAACTTGGTCTTGATAAATCCCCAAATTGGAAACCCACGATAATGTCACAAATCAATTCCCTAATTGGATTTGATAAAAAAATTGAAAAAACAGGATAGAAGAGAATCCCCAAATCAATCCAATCTTCAATCTACAGAAATCGAATCTGAGAGAAATCGAACTTCATATCTGCAGAAATCGAATCTACAGAAAAAGCAACCTTCAATTTCATTTTCTTCAATCCAGATCTGTTTCGTTTTCTTCGTTTCGTTTTCGTCAATGGTATTTCTGCGGTGAGAAGAGAGGGTGAGACTGAGGAGGTTGAAGATGAGTTTTTCCCTCTTCAGTGTTTGTGGCTGTGTTTGGTGAAGATGAAGAAGAGATGGGTCTGTATATTTCCCATGGAGTGAATTAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACAATGAATTCTGAAGAGACAAATAATTTAAATTAATTAAAATAAAAACTAATGACATGGCAGCCCAGCCAACATTAAAAAAAATTGAAACGAATAAAAAATGTCACGTAGACGTTTTTGTAACGTCCATTTAATAGAGGGACTAACGTCAAAAAAGTTAATTTTGCAAGGAGTTTTTAAAAATAAAAAAAATTGTAGGGGGTAAAAGCAAAACACCCCATATTTGCAGGGGGTAAAAACGTATTTAAACCAAAATAAAAACACACTATATTTCTTTTGACGATAATTATGATCTATTCCCTCCGTCCCATATTATATGACTTTCTAATCAAAAAAATTTGTTCCATAATACATGATTTTTCAGAATCTCAATTAAACATTAATGTTTCTTTTCCTACCATACCCTTCATTATTTAATAATATCACTTTCATAACTCTACTAATTTATCTTCTCAATGTCACTAATGAAGGTTAATTTGGTAAACTAACTCACAATTTCTCTTTCCCATACAAAATTAACTAATTTTCTTAATATGTGTGAAATGACCCAAAGCGGCATATAATATGGGACGGGGGGAGTATTAAAACAACAGAAAACAAGTCTACTATATCATACGAGATGAGATGCTCTAGTGTTCCTAACTATTTCCTTAGAGTAGGACTTAGCTAGAACAGGAGAGTAAGTAATTACTAAGTATTTCGTGGAAGTATAGAGTGTAAGATGAATATCCAATGTCTGATCCTTTGATTAGCCTCTCACGACAATATATATAGTACATCAGGAGTTTAATGATAATAACTACATTTATAGCCATTGCGGAATCAGTGACAAGATTACAGGGGTTTCCTTAAATATCATGTCCATCGTCCCCTTGCGCCCGACCCATGATGGGAGTCGTGCTTTAGGTGAGGAGTGGAGTCCCTCAGTCCCTATGTTGGAAGAGTCGTTCAGTTCTGGCTTCCCACTAGAGTCTCTCGGCTTAATATGCTACCATGCAGCAGTCGGTTCGGCTATGAGTGACATCTGATCCTTCATGTGATGGTCGGATCGGCTGTGAACATCTAGCTAGCTAGCGAATCCTCACAATAGAATCTATTAAGTCACACTTTTTAATGACTATGATATCAAATTACCTTTGGCAATAATCAACTGCAATATCAAGTAATTATGTATCATAGTCCTTAAAGTATAATATTACAAGTACTAGTTTGGCAATCCCAAACATCCAATCATATAACGACATTTTTTTTTACCAAAAGTTAATTTAAATTTTGAACTATTATTCTTACGGGATATCGATATCAGCAAATCTCAAATATAGAATTCTCCTAAATAAAAATGGAGTAGTACAATAATAGTCCACAATCCACATGCTAGGGATGCGCGTGGTGGTAATTTATAGGAAAACGCCGACGAAACACAAACCGTAAGTTGGCTCAAAATCAAATGCTGGATCCAAGCTGTCCAAAAACCGGAAGTGCAACCGGCTAAACCGGTTCACAAAAAAGTGCATTCATTCATTTGGATTGAATTTGGGGTTCATTTGATAGCCCAACCACAGTATAGCAGTCACCTAACCCGAGTCAGATTTTAACCCAGGTTTGTTTATTTAAAGACACAATTTCAGAACTAAACTGGCCTGTGAACTCGATCGTTCACCATCAACTCTTCCCTTCTTTCTTTCTTTTCACTTCCAATCCCCTTCTCCACTATCTTTGTTTCCTTCCTAGCTAGTCCATAAAATTTTACTGTGTAATGATGTAGAAGAATAATTTAAAAGAAACTTGACTGAAAAAGATATATTAATTGGTCATTGGGTTTTGGTGTTTGTGGGAGATATTTTTTGTTGTTTGGTTAATTGGGTTTGTTTTATTCTGTGTGTTGGAATTGTTTGATGGGTGAAGAAGAAAAACAAGTGTTGAGAAAAAAGGGACACATGGTGGAAATTAATGGAGATAAGTGGTCTTCATATATTAGCTGCTGCTTTAACAACTGTGCAAATTGGCACTGTTTAAGATACCAAAATTCCTGTTCAGTTGCTCCCGTTAAGTGAAAAAAAAAAAAACAACCTCGTCCTCTAACCTTTTCTTGAGATCTTAATTTAGTAAAAACATAAAAAGATCATAGGAGTATTTGACACCTTGATCTAGCAAGATCCAATCATCCTCCACTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02183.21	HALZ	113	155	9.20E-18
PF00046.32	Homeodomain	58	111	1.20E-16

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-HD-ZIP
Transcription Factors Family	HB-WOX

Gene Ontology

GO term	Description	Category
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0045893	positive regulation of DNA-templated transcription	Biological Process
GO:0008483	transaminase activity	Molecular Function

InterPro

InterPro term	Description
IPR003106	Leucine zipper, homeobox-associated
IPR009057	Homeobox-like domain superfamily
IPR045224	Homeobox-leucine zipper protein, class I, plant
IPR017970	Homeobox, conserved site
IPR001356	Homeobox domain
IPR000047	Helix-turn-helix motif

trEMBL

trEMBL term	Description
A0AAN9R9T8	_

SwissProt

SwissProt term	Description
ATHB6_ARATH	Homeobox-leucine zipper protein ATHB-6

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G22430	homeobox protein 6
Medicago sativa L.	MsG0480023251.01.T01	_
Oryza sativa L.	LOC_Os08g37580.1	homeobox associated leucine zipper, putative, expressed
Cucumis sativus L.	Csa012183	_
Glycyrrhiza uralensis Fisch.	Glyur001171s00030964.1	_
Codonopsis lanceolata	Cl_chr01_03310T	_
Arachis hypogaea L.	AH13G47480.1	Homeobox-leucine zipper protein ATHB-6 like

Expression pattern