Gene detail

Detail information of Am05G038050.1 Annotation

Gene ID	Annotation
Am05G038050.1	ubiquitin-specific protease 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G038050.1	mRNA	Chr05	173364544	173369620	-

Sequences

CDS:

>Am05G038050.1
ATGGGTGCTGCGGGTTCTAAGCTTGAGAAAGCTCTTGGTGACCAATTCCCAGAAGGAGAGCGTTATTTTGGCCTTGAGAATTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGCACTATACTTTTGTGTTCCATTTCGAGAACAACTACTAGAGTATTATGGAAATAACAGAAGCATAGGGGACGCGGAAGAAAATCTCTTGACTTGCTTAGCTGACTTATTTTCACAGATAAGTTCGCAGAAGAAGAAAACCGGTGTCATTGCCCCCAAACGATTTGTACAGAGGCTGAAAAAACAGAACGAACTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAATTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTACAAAGAATGATCCAGAGACATCACCACCTTCTGAAAAGATCGCAAATGGGATAAAGAACGGTCATGCTAATGGACCTCAGAAAGAGCCTTTAGTTACTTGGGTACACAAAAATTTTCAGGGAATTCTCACCAATGAGACGAGGTGCTTGCAATGTGAAACAGTGACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAACAAAACAGTTCAATTACATGCTGTTTGAAAAACTTCAGTTCCACTGAGACGTTGAACGCTGAAGACAAATTTTTCTGTGATAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCGCCCCACATCTTGGTCATTCATCTTAAGCGGTTTAAATACATGGAACAGCTGGGTCGTTACAAGAAGCTCTCGTATAGGGTTGTTTTCCCCCTTGAGCTGAAGTTGAGCAATACTGTAGAAGACGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTGCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTTAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGATGAAAATGTCGAGATGATTGACGAGTCTGCTGTGCAGACTTTCTTTGGATCAGCACAGGAATATTCAAGTAACACAGACCATGGGTACATTTTGTTCTATGAGAGCCTTGGCCCTGGTAACAATAACTAG

Protein:

Promoter(3k):

>AM05G038050.1
ATGACTTTGCGACGGATACATTTGCGACGAAAAAATCCGTCGAAAACGATTTGCGACGAGCGATTTTGCGACGACTTTTTGTCCGTCGGAAAGTTCGTCGAAAACATCAATTTCCTACGAAAATCGCTGCATTTGCGACGAAAATTGCCGTCGGAAAGCGTCGATTTTCTTGTAGTGTTTTATGTCTTGGGTCCCCAAAAGAAGAGCATCTTGTTGTTATGAGTAGTACCACAACTAATAACTCCTTCATTTGTTTGGTCTCATACTTGTATAGCCTCACAACCTCTCTCATTTCGATATGAAATCAGTTCATTTATGTGTTATTTCGCCTAAAAGCATGCTATGAGCCACTTTTTGTTCATGCTTAATGCATCAGTGATCACTCCTTATCATCATCAGCCCCTGACGTCACATATTTTAGAAAATTTTAGGACTAATGGGACTAATTTCTCAAACTTTAGAGACTACTTATAAGAAAGTGTGTTATTTCAATGCGTTGTTTTTAAACTCGGACGGACATGTTGATCGTGGTGCTAGGTGACGGGTCAAAGGGAAGGGTCACTACTTGAACTGGATGATTCACACACACACAAACACACACACACAAATTGACTACCAAGTCTTATCATAACTACGTTAAAAGTCATTTATATCATGGTTATGATAGTGCACTAGTTTTACGCCAATGGTAAATAATATTTGTGTAAAACAACACAAATGATCATGTGGAATTTTGGTCTATAAATAGTGTGACAGGTACTACCTGTAAACTCATATACAAAAAGTGTAGATTCCATATCCGAATTTGAATAACCATGGAAAATATCCAGCCGATTTTTACCAATTGTGCTAGGACTTACCGATATTTCCAACATGGGGATCTAAACTCAAGAAATGTAACTCTAAATCACATTTTATAAATTTTTAATGATTAGTGGTATAATCAAAAATCGCGCAGCCCAAATTGGGTTGCAGCAGTTCGCAGTTCTAGGGGTGTTTGTGGTTTGGTTTGGTTTGATTTTGAACTAAAAAGTTCTAAGGGTGTTTGCGATTTGGTTCGGTTGGTTTCTTAATAAAATCCGAACCAATCCGATCTGAACCAATGCAGGTTGGATTCGTTCTGTTTTTTCGAGTCGAAAAACAGAATACGATATAAAGTTAAATTAATTAATTTAATTCTAAAGCCAAATATTTTAAAAAATAATAATGTGATTATTATTTTATTCACTTTTGAAATACCAAACTTAAAATAAGTAACATTAAAAATATAAGCTACATTATAAACTTAATATGCAAAATTTGTCGAAATAACAACCTACAACGTTATTTCTAGTAAACCACATGTAGTAACATTGAATTAGAAACAAAATTTAACTGCAATTTTAGTTTGTAATTTCAGTTTTTGGTGTGTGTGATAAGTGTGTGTGTGAGACTAAGACGACACATTGACCGGATTAAGTAGGTTTTTTAATAATATATGCAGTTTGATTTGGTTGCGGAAAAAAGAGCCGCCATTTGAAACCGAATCAATTAGTTGATTGAAAAATGACCAAAAAATATCCAAATCAAACAATTTTTTGCGGTGTTTGATTGGAATCGGTTTTCGGTTTTTATTTGGATTTGTTTTGATTTCAACAACCCTAGTTCACAATAGTTTGAGAACATGACCGAAAACATAACACGATCCGGATATACCAGCCAGCTAGTTCTGATTGGATCGAATTGAACCGGTATTTAAAACTTTGGTTAAATCTTGACAAAAAAAACTTTGGTTAGTTAAATGGAGTTAATAAAACCATTATTTATTCAGTTATTTATTTATTAGTTTTTTTTTTTGACTAAATACCCATTTTAGTCCTTCACAATTTTTTGATAAGATAAATTGGTCCCTGACAATTTTTTGGGACAAATAAGTCCCTAGCGTTTTCAAAACGGGGACAAATTAAACCCGTTTTGAAAATGCTAGGGACTTATTTGTAGGGGTGTTCAAAACCGAACCAAACCAATAGAAAATCGCAAACTGAACCATACCAAACCGAAAACAGCAAAAAACCGCTTTTAATTGGTTCTGTTCGGTTTTTGTCTTTACTAAACCGTGCGGTTCGGTTCGGTTTGCGGTTCCAATTACAGAAACCGAACCAAACCGCTAAATTATATATATATACTACTGTTTTTTTTTTTCCAGTAGGCTTACTTAGTTACTCCTTAATATTTGGCTTGCAGACTCGGCCCAACCCCAAACCCCAACACAACCCAATCACTCACTTTCACTATTAGGTTAATTTGCTTTAGAAACCCTCTCAAGCGACCCATCTCCCTCAATCACTCACTTTCGTTTTTATAAGCTTTGATTTTTATATGTTTTCCACTTCAGTTCACTCATTGTACGTGATTTTTATTCCCTTTATGTAAGTGGAGAGCTTTCAAATGGTGTTAATTATTATTGAATTCCCTAAAAAAATTATTATTGAATTTAATTATTAGTTGTTAGTTAAAGAAATTACATATTTTTAAATTATGTTTCGCCTCGCTAAAAACGGAACCAACCTCACCAATCCAAACCGTATTGGTTTGGTTTGGTTTGGTTATTTTTTTAAAGTCAACCGAACCAAACCAAACCGCATCTATTTAGACCTTGCGGTTCGGTCCACTTTTTTGCTCAAAACCAAACCAAACCGCACCGCGAACACTCCCTACTTATTTGTCCAAAAAAATTGTCGGGACCAAATTGTCCAGTTGAAAAATTGTCGAGGACTAAAATGTGCTATACACTTTTTTTTTTGTCAAATCTCTCCTTCACATTTCCATCTGCATTACGTCGACCTCCGTTGTCTCGCTTTCGAAAGAAACCCTTGTTCCGTTCTTTGCGTTTACATCCATAGAATTAAAAACCCAGAATCCTTATAAGATTCACTCGGTAGAAAACCCTAACAATCAAAGCGGCCATTCAGCGTCTCATGTTACGTTGAATCGGATTGGAATCTGAGTTTCTACGCGCTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00443.32	UCH	23	360	1.10E-66
PF13423.9	UCH_1	24	329	2.40E-24

Gene family

Gene family	Subfamily
Ubiquitin Family	USP

Gene Ontology

GO term	Description	Category
GO:0004843	cysteine-type deubiquitinase activity	Molecular Function
GO:0016579	protein deubiquitination	Biological Process
GO:0005829	cytosol	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0006508	proteolysis	Biological Process

InterPro

InterPro term	Description
IPR018200	Ubiquitin specific protease, conserved site
IPR028889	Ubiquitin specific protease domain
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765	Papain-like cysteine peptidase superfamily

trEMBL

trEMBL term	Description
A0A1S2YGL2	_

SwissProt

SwissProt term	Description
UBP3_ARATH	Ubiquitin carboxyl-terminal hydrolase 3

KEGG

KO	Description	Enzyme
K11842	ubiquitin carboxyl-terminal hydrolase 12/46	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G39910	ubiquitin-specific protease 3
Medicago sativa L.	MsG0480023315.01.T01	_
Oryza sativa L.	LOC_Os04g37950.1	ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Cucumis sativus L.	Csa004197	_
Glycyrrhiza uralensis Fisch.	Glyur000779s00022844.1	_
Codonopsis lanceolata	Cl_chr01_37490T	_
Arachis hypogaea L.	AH10G09200.1	Ubiquitin carboxyl-terminal hydrolase 3 like

Expression pattern