Gene detail

Detail information of Am05G037640.1 Annotation

Gene ID	Annotation
Am05G037640.1	RNase L inhibitor protein-related

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G037640.1	mRNA	Chr05	172603882	172610291	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G037640.1
AGTACGTAATTTAGAAAATAATATATGATTTTATGATAAGGATAATTTTCTCTTTTGGCATAATCTAAAATTAAAAAATCTATTGAAATTTAAAAAGTTAAAATAAGTGATAAAAGAATAAATTTACTATTAAAAAAGTATAAAATAGAAAATTAATATAGTTTTTCAACAAATGAAATATAGCCGTCACATGGGTAGTTTTGTCATTAATAGAATAACATATGTTATCTTTGCATCTAAAAAAGATTAATATATATTATCTTATATCTTATCTGGTGTGCTTACCAAAAAAAATATATATATTATCCTGTCACTATCATATCCTATCTCTTGTCTGCTTCATATCGTATTCGGTCTCTATCCTATCCTGACCACCAAGCGGACTCTTAGAGTTTGTATCCCCCTTGAACCAATAGATTTTAGCTATTTGAGGCCAATACCTCTCCTCTTGATTCAACAACCAAACAACCAACACATGTGTTGATGATTATCTTTATAAAGAGGGTTGTTTTCACCATCTCAGGACCTTCCCTTAGAGCTTCTATCTCCTTCCTACACTTACCGATTTCGACATGGTATTTCCCGCGCAATTGCCACCCCCATTCATCCATGTCTTTCGAACATGTTTCAAGCTTTGGAATTACTTCTTGTATAGAGGCTATATCCCACCCTTGCTATCTCTTTTAGTTGTGGTTCCTCCAACCAAGCATTTTAAAATTAAATCTTCTTGGGCCCACAACTCGTTGGTAGAATGGTATGTAATAAAGCCAAGTGAATGGGAGAGTGATCAGTTTTGGAAGTAATACAATTGACAAACTTGCTATCTGGAAATGCATCAAGCCACTCACTAGTAACAAGGGCCCTATCAAATCTTACTTCCATCACGCGAGGCTTGCCTTTACTTCTCGACCATGTAAATTTGTAACCACTATCGCTATCAAGGACAGCCTCTCACGAGTCAGCATGTTGAGGTGGAAGGTGAGCTGAAAAATGAAGCAATTGAAGAGAGAGAACAAGTGGTCCCTAGGCATAGCACAATAGAGCACACCCCATGAGGGGTGAGCTTGTTAACAAGTGATGTATAAAGAATGAGAGAGAGTGAATGATGAGTCGGGCAATTGGTGTGATGCTATAGTTTTCTTTTCCTAGCCTCCGCTCCTTCTATTTTCTGTTTCTGTACTTTACTATTTTCCCTAGGGGTGGACATAATCCACGGAACCGCCCGAGAACTGAAGAAACTGTAAAAAAATATGTGCAATTCGGGTATACATATCCGAGTTGGTGGATTTTCGGGTGAAGCAATCTGTTTCAATTGGACCGTAACAATCGGCTACGAGCCTGATTTGTAAATCCAAACTAAACCGAATCCGACCGAACTATCAATAGAAAGTAGAAAATTGACTAGTTTTTTATATACTTAACCTACTACTGCTGCTCTGGACAGATAATTTTCTCTTCCCAATGTTTTTCTTTAGCCACAAACCAATAAGAATCATCCAGCACCAAAGTCAAAAGGGAAAATAGTGGTCAGAGAACTTGATACACACCCAAATGTATTGTGACTTCTATCAAAGTGTTTTATTTAATAAACTTAAAAATAGTTTATGGATGAGAGAGAATATATCAAAACTTTTCACTCATATTTCTCTTTCTTCAACCTCTGAAGAAAATTGTTCCAGGCGCCATGGAGAACTATCCGAAAACTCACCACCACAAAATTGGGCTTTGCTTCTTTTTTCTCTTTCTGTCAACACGCTAGAAACCACCCGTTGGAACCGCCAAACTGCCAAACCGAGAACTGCACAACCCGAAGCTCCAAATGGTCGGAGATGGGTGGCTATTTACTGTGGTCGGTTTTCGTCAGATAGTCGTTTTGGGGACCGAATATGACCGGTGTCCACCCCTAATTTTGCCTTTTCATTAAAGTGTACTCTTCGTGTTCTATTGAAGAGGACTATTGTAATTGACTTCCATTAATAGCAATTACTTGCTTTTGTTGCATTCATTTTGATCTGTCATTTGAGTATCGTAACACAACCTCACGAAAACCTCGTATTCTCCACATGGTTCAATTAGTTTACTCGCTTGAATCATAGTTGAACTGCATAAGTATTAAATACTAAATAATAAATAAAAGATATTAAATTTTGGAGAAAAAATATTAAAAAACCATAAAAAAATCATTTTAAACAACTTAGCCAAACTTAATTGACGATTCAAGACAACGTAAGTGTGATTCAACCCGATTCAACTCAACACTGGTCGGTTTTTGTCAGATAGTCGTTTTGGGGACCGAATATGACCGGTGTCCACCCCTAATTTTGCCTTTTCATTAAAGTGTACTCTTCGTGTTCTATTGAAGAGGACTATTGTAATTGACTTCCATTAATAGCAATTACTTGCTTTTGTTGCATTCATTTTGATCTGTCATTTGAGTATCGTAACACAACCTCACGAAAACCTCGTATTCTCCACATGGTTCAATTAGTTTACTCGCTTGAATCATAGTTGAACTGCATAAGTATTAAATACTAAATAATAAATAAAAGATATTAAATTTTAGAGAAAAAATATTAAAAAACCATAAAAAAATCATTTTAACAACTTAACCAAACTTAATTGACGATTCAAGACAACATAAGTGTGATTCAACCCGATTCAACTCAACCCTATTAAACCGGTGGGTTCCCGATTAAACCGGGCCGATCCGATTCTCACAACAATGTAATCCATTCCATCCACCGATCTAGAAGATGTCTAAAAAATTGTGGTTTTTGTTTTGTTTTTGTTTTTTTTCCAATTATCGGCTATCGGTTCGGTTCAGATTTTTTTGTCGGTACGGATTAAGTTGTGATTGCGGAACCGCCTCTTGCCGGGTTCGAGAGAGAAAACATGAACTATATTTAACCTAAACGCAAACTGAACAGCAATAGCAGCATTAACTAAAACGCAAGACGCGACCATCGTGAACCGATTTCCAGTTTGTATACTTCTACAGTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04034.16	Ribo_biogen_C	92	218	2.10E-51
PF04068.18	RLI	55	85	1.00E-12

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0106388	18S rRNA aminocarboxypropyltransferase activity	Molecular Function
GO:0000455	enzyme-directed rRNA pseudouridine synthesis	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:1904047	S-adenosyl-L-methionine binding	Molecular Function
GO:0030490	maturation of SSU-rRNA	Biological Process

InterPro

InterPro term	Description
IPR007209	RNase L inhibitor RLI-like, possible metal-binding domain
IPR007177	16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal
IPR022968	16S/18S rRNA aminocarboxypropyltransferase Tsr3

trEMBL

trEMBL term	Description
G7LAF7	_

SwissProt

SwissProt term	Description
TSR3_MOUSE	18S rRNA aminocarboxypropyltransferase

KEGG

KO	Description	Enzyme
K09140	rRNA small subunit aminocarboxypropyltransferase	[EC: 2.5.1.157]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G10070	RNase L inhibitor protein-related
Medicago sativa L.	MsG0480023356.01.T01	_
Oryza sativa L.	LOC_Os03g09920.2	RNase L inhibitor protein-related, putative, expressed
Cucumis sativus L.	Csa019575	_
Glycyrrhiza uralensis Fisch.	Glyur000048s00002204.1	_
Codonopsis lanceolata	Cl_chr01_02480T	_
Arachis hypogaea L.	AH03G34300.1	Ribosome biogenesis protein TSR3 homolog like

Expression pattern