Gene detail

Detail information of Am05G037450.1 Annotation

Gene ID	Annotation
Am05G037450.1	Ribosomal protein L6 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G037450.1	mRNA	Chr05	172280087	172282049	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G037450.1
ACTGGTCAAATACTCAAAATATCATTTTGTGCGAATTCTTCTTCCTCCTTTCTTATTCTATGTTGTAACACCAATAATACACAGCCATTTTTTGGTGAATTCACTTAGCCGCGTCATTGTTACCACCCGTGCATAGCACGAGTGTATCTCCATGTCCTAGTTACTATTATTATTCCACTATAATTAAAAGACAACCAACCCACAACCAATTTTGTACCAATTACCATATAATTTCAAAATCATTATCATATAAATTTCAAAATCATTCCTATTACAGTTTTTGATTAATACTAACCGGTGAATCTTATGCACAAGCTATTTTTGTTCTCAAATCTGCACTCTACAAACAATTCTCAAATTAGCCCAATCATAACATATTAAAATAAATCAATTTCAGCATTAATTGCCTTTGCGACTAGATCCTTTCAATTTCAAATTTCAACAAGAATTAGAAATCAATTGCCATCTATAAATACCACAACAACCTTAATCCCAAAGATCCACACACAACCGATCACAACAATAGCTGATTTGTTTGAAAAAATTGTCCCGTCCAAAAATGAGATCCAACATGGCTAATACCCATGATCTGCTTTCATCTATTAACAATAGCAAAAAAAACTTAAGGGTTTTTGTACGAGTACTTGGAATGTGGCTGATGAGATTGACAAATAAAGTGCCATTTGCTATCAAGTTGGTCGTCATTGATACACAAGTTGCACTTTTGGTCTAAGAAGTTTGTCTTTTCCGATGAACTTTCAATTCGTTTAAATAGCAATTTATCAAGAACTACATCTCATTATATTTCACTTTTATTCACTTTTGATTAGCAAAACCCGGTTGCTATAATTTTATTGAAATTTCATATTCAAAAACTGCAACTGAATAAACTATTCTTTTAGGTTCTTTGAAAATCTGAAAGCACTAGGGTTTAGAGGGGAGCATATGTGAGTATTCGAATATCAAGTGTAAAAAATTTATCATCAAGAATATGGCTCTGCCATAAAAATAGTACATAAATCAGTATATTATTCTATTTGTGTTTAACAAGGATCCATTTTGCGTGATGGTGGATAAATCCGTCTTGAATAATAATTTATCTCAGACTTGATGAAATTATTTATTTTAGTCGGAATACTCAAAGTTTTGCATGATGGGCCACGACAACAAGAAAATACCAATATAATTTTTTTTCATGCGACCAATCTACTTGCATTTGACAACATTATTGCAACTAGAAACGATAAAAGGGATAATAGTGATTGATTTCAAACAAATATGACTAAGGCTGGATTTGTATTAGTGAAACTGTATAGGAAATAAAATGACAACGATAACTAATCATACATTGGTATAATCAAAGTTTGAGGAAGCTCAACACTAACGACTAACTGAATCGTCTATACCTATTGAAATTGTAGTTGCGACAGGACCTAGAAAGAAGAAATCCGAAGGATTACCAACAATTTTGAACCAAACTTTAAACGAATAAGAAGAATAGTTGTTTGTGAGATATGAAATCTTTCCAACAAACCAGAGTGAACAACATTACCTACACTATTGGGGGAGAGAACGTCTCGATCATCAATGAAAGGCGGTTTCTTGGATACAAAATTCCAATTTTCACCAAAAGAGAAACCCTAAGACAAGATAGAAACAAAACTCGCGACTTTTTCTCTACTCTGTCACTACTATATATCCCACTTAATTTGGGATTTTGCTCGAACCCAACCAGATGATGGTTATAATCTGTATCGCTCCATATTGTATTTGTTTGCTCGAACCCAACCAGATGATGGTAATAATCTGTATCGCTCCATATTGTATTTGGGGGGTCGACGCTGCCCCAAATATATTACATAAATATTATTATCATATATATATATATATATTATTTTATAAGCAATTAATTTTGTAGACTTTTTGTGTTTTTAATTTAAAGTATTAATAAAATATTAAAATGTGCTTATTTTTATACTGTACTTTTATACTATTAAATATTAAAATATCAAAGTAAGACTAACTTCTATATTGAAATGTTAAATTTTTATTTTTTAGTCTTAATTTTAAATATTTTTTCAAAATTATTATATGTTAATTTTATTTTTGCTAACTTTTAATAAATTTTCGAGATCTCTGTGGACGGAGGATGGGGATGGGGAGGAACACTCTCCGAAGCGGGGATTGTGGACGGGGACAGGGGACAATTTGGGAGGCGGGAATCGTGGACGGTGACAGAGGACAATTTGGGAGGCGGGGACACGGAGTGGGGGAGTACTCACCACCCCGTCCCACCCCATTGCCATCCATACAGTTCAATTATGTTTTAGATCAAGTCTCACCTATAAATATTCGTCAATTAGATAAGTTAATTTTGATTTTATATCTACATTTAAATATATGTATATATATATATATATATATATATATATATATATTATAAAATAGCACTAAAATTTTAAGTTTTGTTAATAAGTTGTCCATGTAATGACTAAAAGCTTTCAAATTAACACACAAAATATGTTTACAATTTTAAAATTTGCCATAACAAATATGTTAAAATTTTAGTCTCCATCATATACAATTTACATGTGGTTACAAATACTATATCATCTATTTATAACACTAATGTCATTCCTTAATGATATTGTCAAAAAAAATGTCATTCCTTAATGCATCTATATAAATATAACAAAATACTTATGTATTTTAATATAAAAAATTATGATCGATTAAAAGATCATGTATACCCGTGCATCTACGCACTAGTTAGGGACATTCTATAAAAAAAAATAGGAACACACTACATTGGCCAATTATTGGTCAGATTACAATGGGCTTGGACCTATAAACAAAAGAAAAACAAGCCATGGGCCGAAAGCAGTGATCCTTTGGCCCGTTACATAGATTTAATTCCACATCAGTATCTTCCTCACTCTCATTTGCGCAAAGACCAAAAATTAGGGTTTCTAGTTTGCCGCAGCAGCAGCAGCAGCAGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01159.22	Ribosomal_L6e	126	233	6.20E-39
PF03868.18	Ribosomal_L6e_N	3	61	1.50E-16

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0022625	cytosolic large ribosomal subunit	Cellular Component
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0000027	ribosomal large subunit assembly	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR008991	Translation protein SH3-like domain superfamily
IPR005568	Ribosomal protein L6, N-terminal
IPR041997	Ribosomal Protein L6, KOW domain
IPR014722	Ribosomal protein L2, domain 2
IPR000915	60S ribosomal protein L6E

trEMBL

trEMBL term	Description
A0A1S2YFF1	_

SwissProt

SwissProt term	Description
RL6_MESCR	Large ribosomal subunit protein eL6

KEGG

KO	Description	Enzyme
K02934	large subunit ribosomal protein L6e

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G74050	Ribosomal protein L6 family protein
Medicago sativa L.	MsG0480023380.01.T01	_
Oryza sativa L.	LOC_Os04g39700.1	60S ribosomal protein L6, putative, expressed
Cucumis sativus L.	Csa020903	_
Glycyrrhiza uralensis Fisch.	Glyur000391s00016070.1	_
Codonopsis lanceolata	Cl_chr01_35750T	_
Arachis hypogaea L.	AH20G23800.1	60S ribosomal protein L6 like

Expression pattern